Results 41 - 60 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 2942 | 0.67 | 0.699891 |
Target: 5'- aAGCCGGGGUCGGCaguccaaCGUU-GCUGUAa -3' miRNA: 3'- -UCGGCCUCGGCCGc------GUAAcCGACGUc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 120902 | 0.67 | 0.699891 |
Target: 5'- uGGUCGGGGgCGGCugcuuGCGUUugcGGCUGCc- -3' miRNA: 3'- -UCGGCCUCgGCCG-----CGUAA---CCGACGuc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 119983 | 0.67 | 0.698937 |
Target: 5'- cGUCGacGAGCCgGGCGaCAUgcgccgcUGGCUGUAGu -3' miRNA: 3'- uCGGC--CUCGG-CCGC-GUA-------ACCGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 87 | 0.67 | 0.690327 |
Target: 5'- gGGCCGGccGGUCGGaCGUGUUucgGGCcgGCGGg -3' miRNA: 3'- -UCGGCC--UCGGCC-GCGUAA---CCGa-CGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 240636 | 0.67 | 0.690327 |
Target: 5'- gGGCCGGccGGUCGGaCGUGUUucgGGCcgGCGGg -3' miRNA: 3'- -UCGGCC--UCGGCC-GCGUAA---CCGa-CGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 180500 | 0.67 | 0.690327 |
Target: 5'- uGGCCGGcugcaucagcGCCGucuGCGCGUagGcGCUGCAGg -3' miRNA: 3'- -UCGGCCu---------CGGC---CGCGUAa-C-CGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 39549 | 0.67 | 0.690327 |
Target: 5'- aGGUCGGuggccccgacGCCGGC-CAUcUGGCUGCGc -3' miRNA: 3'- -UCGGCCu---------CGGCCGcGUA-ACCGACGUc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 239776 | 0.67 | 0.690327 |
Target: 5'- aGGUCGGuggccccgacGCCGGC-CAUcUGGCUGCGc -3' miRNA: 3'- -UCGGCCu---------CGGCCGcGUA-ACCGACGUc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 200315 | 0.67 | 0.690327 |
Target: 5'- gGGCCGGccGGUCGGaCGUGUuucgGGCcgGCGGg -3' miRNA: 3'- -UCGGCC--UCGGCC-GCGUAa---CCGa-CGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 143218 | 0.67 | 0.68072 |
Target: 5'- aGGCCGGAGCCGuCGCcgUGuCUucucgGCGGc -3' miRNA: 3'- -UCGGCCUCGGCcGCGuaACcGA-----CGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 139174 | 0.67 | 0.68072 |
Target: 5'- gAGCCGGuGUC-GCGCAUguUGGuCUGCu- -3' miRNA: 3'- -UCGGCCuCGGcCGCGUA--ACC-GACGuc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 79621 | 0.67 | 0.679757 |
Target: 5'- uGCCGGGGCgaccgcggcgccuCGGCGUcgUcugcuGCUGCAGc -3' miRNA: 3'- uCGGCCUCG-------------GCCGCGuaAc----CGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 115376 | 0.67 | 0.671077 |
Target: 5'- uGGCCaGGGCCGGCauguGCAg-GGC-GCGGg -3' miRNA: 3'- -UCGGcCUCGGCCG----CGUaaCCGaCGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 176072 | 0.67 | 0.671077 |
Target: 5'- uGCCGcGccGGCCGGCGUcUUGGCcacgGCGu -3' miRNA: 3'- uCGGC-C--UCGGCCGCGuAACCGa---CGUc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 102591 | 0.67 | 0.670111 |
Target: 5'- -cUCGGGGCUGGCGC--UGGCcacgucgucgucgUGCAGc -3' miRNA: 3'- ucGGCCUCGGCCGCGuaACCG-------------ACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 19162 | 0.67 | 0.668178 |
Target: 5'- -aCCGaGAGCaCGGCGCuggUGGCcgacgugcacgagcUGCAGa -3' miRNA: 3'- ucGGC-CUCG-GCCGCGua-ACCG--------------ACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 87149 | 0.67 | 0.667211 |
Target: 5'- uGuuGGAGCgGGCGCAguucgugcgcgcGGCcgUGCAGc -3' miRNA: 3'- uCggCCUCGgCCGCGUaa----------CCG--ACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 126728 | 0.68 | 0.661405 |
Target: 5'- gAGgCGGcgcGGUCGGCGaCA-UGGCUGCGu -3' miRNA: 3'- -UCgGCC---UCGGCCGC-GUaACCGACGUc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 211460 | 0.68 | 0.661405 |
Target: 5'- cGGUCGGGGCaggccaugaGGCGCAg-GGC-GCAGc -3' miRNA: 3'- -UCGGCCUCGg--------CCGCGUaaCCGaCGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 194723 | 0.68 | 0.661405 |
Target: 5'- cGuCCGGAGgCGGCGCuacaaGGuCUGCGa -3' miRNA: 3'- uC-GGCCUCgGCCGCGuaa--CC-GACGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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