miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14636 5' -61.4 NC_003521.1 + 142908 0.66 0.737554
Target:  5'- cGCCaucAGCCGGCGaCGUcGGCguUGCAGc -3'
miRNA:   3'- uCGGcc-UCGGCCGC-GUAaCCG--ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 169121 0.66 0.737554
Target:  5'- uAGCgGGGGCCaGCGacUUGGagaUGCGGg -3'
miRNA:   3'- -UCGgCCUCGGcCGCguAACCg--ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 33249 0.66 0.736626
Target:  5'- gAGCUGGcacacgcgcagcaGGCCGGCGCGaucgUGcagcaGCUGCGa -3'
miRNA:   3'- -UCGGCC-------------UCGGCCGCGUa---AC-----CGACGUc -5'
14636 5' -61.4 NC_003521.1 + 212284 0.66 0.736626
Target:  5'- aGGCUGGccagggcgaaGGCCGGCaugggcacgcagGCGUUGauacucgccacguGCUGCAGg -3'
miRNA:   3'- -UCGGCC----------UCGGCCG------------CGUAAC-------------CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 190524 0.66 0.728242
Target:  5'- uGGCUgaGGAGCgaGGUGCGgcGGCaGCAGc -3'
miRNA:   3'- -UCGG--CCUCGg-CCGCGUaaCCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 64760 0.66 0.727307
Target:  5'- cGCCG--GCCGGCGCGgcaccgGGCgaucccaagcgccUGCAGa -3'
miRNA:   3'- uCGGCcuCGGCCGCGUaa----CCG-------------ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 167069 0.66 0.725434
Target:  5'- cGCCGGuGCCGGCccacauguagaagaGCA---GCUGCAc -3'
miRNA:   3'- uCGGCCuCGGCCG--------------CGUaacCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 198377 0.67 0.718856
Target:  5'- cGCCGGA--CGGCGUugUGGCggGCGGc -3'
miRNA:   3'- uCGGCCUcgGCCGCGuaACCGa-CGUC- -5'
14636 5' -61.4 NC_003521.1 + 103115 0.67 0.718856
Target:  5'- cAGgCGaaGAGCUGGCGCAgcgcgcggcgGuGCUGCAGc -3'
miRNA:   3'- -UCgGC--CUCGGCCGCGUaa--------C-CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 148436 0.67 0.718856
Target:  5'- cGgaGGAGCCGGCGgAgcgacGGCaGCGGg -3'
miRNA:   3'- uCggCCUCGGCCGCgUaa---CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 169331 0.67 0.718856
Target:  5'- cGUCGcGGCCGGCGUGguuucgGGUUGCGc -3'
miRNA:   3'- uCGGCcUCGGCCGCGUaa----CCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 224531 0.67 0.718856
Target:  5'- cGCCGG-GCCGGUagGCAccccGGCgcccaGCAGg -3'
miRNA:   3'- uCGGCCuCGGCCG--CGUaa--CCGa----CGUC- -5'
14636 5' -61.4 NC_003521.1 + 186619 0.67 0.718856
Target:  5'- uGCCGGAcaCCGGCcaGCAgcggucgGGCUGCu- -3'
miRNA:   3'- uCGGCCUc-GGCCG--CGUaa-----CCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 150536 0.67 0.718856
Target:  5'- gAGCCguGGGGuCCGGCGg--UGGUggUGCGGg -3'
miRNA:   3'- -UCGG--CCUC-GGCCGCguaACCG--ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 173533 0.67 0.709403
Target:  5'- cGUCGGGcGUCaGGCGCAgcGGCUGUc- -3'
miRNA:   3'- uCGGCCU-CGG-CCGCGUaaCCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 137522 0.67 0.709403
Target:  5'- uGCUGGAGuaCCGGCGCG-UGGUgGCc- -3'
miRNA:   3'- uCGGCCUC--GGCCGCGUaACCGaCGuc -5'
14636 5' -61.4 NC_003521.1 + 119593 0.67 0.709403
Target:  5'- cGCUGGgcGGCgGGUGCAgcgucucGuGCUGCAGg -3'
miRNA:   3'- uCGGCC--UCGgCCGCGUaa-----C-CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 111573 0.67 0.709403
Target:  5'- cGGCU-GAGCCGGCGgGUUccGGaCUGCGu -3'
miRNA:   3'- -UCGGcCUCGGCCGCgUAA--CC-GACGUc -5'
14636 5' -61.4 NC_003521.1 + 177730 0.67 0.708454
Target:  5'- uGCUGGAgggcgggcagcgcGCCGGCGCAgcuguacggGGUcGCGGu -3'
miRNA:   3'- uCGGCCU-------------CGGCCGCGUaa-------CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 98531 0.67 0.699891
Target:  5'- cGGCUGG-GCCGcUGCAgcGGCgGCGGg -3'
miRNA:   3'- -UCGGCCuCGGCcGCGUaaCCGaCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.