miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14636 5' -61.4 NC_003521.1 + 169121 0.66 0.737554
Target:  5'- uAGCgGGGGCCaGCGacUUGGagaUGCGGg -3'
miRNA:   3'- -UCGgCCUCGGcCGCguAACCg--ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 190524 0.66 0.728242
Target:  5'- uGGCUgaGGAGCgaGGUGCGgcGGCaGCAGc -3'
miRNA:   3'- -UCGG--CCUCGg-CCGCGUaaCCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 64760 0.66 0.727307
Target:  5'- cGCCG--GCCGGCGCGgcaccgGGCgaucccaagcgccUGCAGa -3'
miRNA:   3'- uCGGCcuCGGCCGCGUaa----CCG-------------ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 33249 0.66 0.736626
Target:  5'- gAGCUGGcacacgcgcagcaGGCCGGCGCGaucgUGcagcaGCUGCGa -3'
miRNA:   3'- -UCGGCC-------------UCGGCCGCGUa---AC-----CGACGUc -5'
14636 5' -61.4 NC_003521.1 + 196766 0.66 0.755921
Target:  5'- uGCCccGGCCGGCGCGaccgcgGGC-GCGGu -3'
miRNA:   3'- uCGGccUCGGCCGCGUaa----CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 39442 0.66 0.755921
Target:  5'- uGCCGGccgAGcCCGGCGCcgagGGCcGCGu -3'
miRNA:   3'- uCGGCC---UC-GGCCGCGuaa-CCGaCGUc -5'
14636 5' -61.4 NC_003521.1 + 135413 0.66 0.755921
Target:  5'- gGGCgGGAaccaaucacCCGGCGCGauUUGGCgcccGCGGg -3'
miRNA:   3'- -UCGgCCUc--------GGCCGCGU--AACCGa---CGUC- -5'
14636 5' -61.4 NC_003521.1 + 111573 0.67 0.709403
Target:  5'- cGGCU-GAGCCGGCGgGUUccGGaCUGCGu -3'
miRNA:   3'- -UCGGcCUCGGCCGCgUAA--CC-GACGUc -5'
14636 5' -61.4 NC_003521.1 + 39549 0.67 0.690327
Target:  5'- aGGUCGGuggccccgacGCCGGC-CAUcUGGCUGCGc -3'
miRNA:   3'- -UCGGCCu---------CGGCCGcGUA-ACCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 143218 0.67 0.68072
Target:  5'- aGGCCGGAGCCGuCGCcgUGuCUucucgGCGGc -3'
miRNA:   3'- -UCGGCCUCGGCcGCGuaACcGA-----CGUC- -5'
14636 5' -61.4 NC_003521.1 + 2942 0.67 0.699891
Target:  5'- aAGCCGGGGUCGGCaguccaaCGUU-GCUGUAa -3'
miRNA:   3'- -UCGGCCUCGGCCGc------GUAAcCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 186619 0.67 0.718856
Target:  5'- uGCCGGAcaCCGGCcaGCAgcggucgGGCUGCu- -3'
miRNA:   3'- uCGGCCUc-GGCCG--CGUaa-----CCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 177730 0.67 0.708454
Target:  5'- uGCUGGAgggcgggcagcgcGCCGGCGCAgcuguacggGGUcGCGGu -3'
miRNA:   3'- uCGGCCU-------------CGGCCGCGUaa-------CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 224531 0.67 0.718856
Target:  5'- cGCCGG-GCCGGUagGCAccccGGCgcccaGCAGg -3'
miRNA:   3'- uCGGCCuCGGCCG--CGUaa--CCGa----CGUC- -5'
14636 5' -61.4 NC_003521.1 + 180500 0.67 0.690327
Target:  5'- uGGCCGGcugcaucagcGCCGucuGCGCGUagGcGCUGCAGg -3'
miRNA:   3'- -UCGGCCu---------CGGC---CGCGUAa-C-CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 240636 0.67 0.690327
Target:  5'- gGGCCGGccGGUCGGaCGUGUUucgGGCcgGCGGg -3'
miRNA:   3'- -UCGGCC--UCGGCC-GCGUAA---CCGa-CGUC- -5'
14636 5' -61.4 NC_003521.1 + 98531 0.67 0.699891
Target:  5'- cGGCUGG-GCCGcUGCAgcGGCgGCGGg -3'
miRNA:   3'- -UCGGCCuCGGCcGCGUaaCCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 137522 0.67 0.709403
Target:  5'- uGCUGGAGuaCCGGCGCG-UGGUgGCc- -3'
miRNA:   3'- uCGGCCUC--GGCCGCGUaACCGaCGuc -5'
14636 5' -61.4 NC_003521.1 + 173533 0.67 0.709403
Target:  5'- cGUCGGGcGUCaGGCGCAgcGGCUGUc- -3'
miRNA:   3'- uCGGCCU-CGG-CCGCGUaaCCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 103115 0.67 0.718856
Target:  5'- cAGgCGaaGAGCUGGCGCAgcgcgcggcgGuGCUGCAGc -3'
miRNA:   3'- -UCgGC--CUCGGCCGCGUaa--------C-CGACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.