miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14636 5' -61.4 NC_003521.1 + 196766 0.66 0.755921
Target:  5'- uGCCccGGCCGGCGCGaccgcgGGC-GCGGu -3'
miRNA:   3'- uCGGccUCGGCCGCGUaa----CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 190524 0.66 0.728242
Target:  5'- uGGCUgaGGAGCgaGGUGCGgcGGCaGCAGc -3'
miRNA:   3'- -UCGG--CCUCGg-CCGCGUaaCCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 87354 0.66 0.768547
Target:  5'- gAGCCGGAGCCcgaggaggaggccgaGGUGgAggacgaGGCgGCGGa -3'
miRNA:   3'- -UCGGCCUCGG---------------CCGCgUaa----CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 113848 0.66 0.737554
Target:  5'- cAGCgGGgcGGCCGGCGaCGacGGC-GCGGg -3'
miRNA:   3'- -UCGgCC--UCGGCCGC-GUaaCCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 212284 0.66 0.736626
Target:  5'- aGGCUGGccagggcgaaGGCCGGCaugggcacgcagGCGUUGauacucgccacguGCUGCAGg -3'
miRNA:   3'- -UCGGCC----------UCGGCCG------------CGUAAC-------------CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 193375 0.66 0.746783
Target:  5'- cGaCCaGGAGUgCGGCGCcc-GGCUGCAu -3'
miRNA:   3'- uC-GG-CCUCG-GCCGCGuaaCCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 99587 0.66 0.773894
Target:  5'- uGGUCGaAGaacugCGGCGCGUUGGUgaccUGCAGc -3'
miRNA:   3'- -UCGGCcUCg----GCCGCGUAACCG----ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 222763 0.66 0.764961
Target:  5'- cGGCCacggcgucgguGGGGUCGGCGCAgaGGaacuuCUGCAc -3'
miRNA:   3'- -UCGG-----------CCUCGGCCGCGUaaCC-----GACGUc -5'
14636 5' -61.4 NC_003521.1 + 224406 0.66 0.773894
Target:  5'- cAGCCGGuacaccucgccGGCCaGGCGCugcgUGGUggGCGa -3'
miRNA:   3'- -UCGGCC-----------UCGG-CCGCGua--ACCGa-CGUc -5'
14636 5' -61.4 NC_003521.1 + 223224 0.66 0.773006
Target:  5'- cGCCGcGAcGCCuGGCGCGUccagccgUGGCaacgaagGCGGa -3'
miRNA:   3'- uCGGC-CU-CGG-CCGCGUA-------ACCGa------CGUC- -5'
14636 5' -61.4 NC_003521.1 + 39442 0.66 0.755921
Target:  5'- uGCCGGccgAGcCCGGCGCcgagGGCcGCGu -3'
miRNA:   3'- uCGGCC---UC-GGCCGCGuaa-CCGaCGUc -5'
14636 5' -61.4 NC_003521.1 + 123154 0.66 0.764961
Target:  5'- cGUCGGAaaagaaggGCCGGCGCAccgucucgcGGC-GCAGu -3'
miRNA:   3'- uCGGCCU--------CGGCCGCGUaa-------CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 135413 0.66 0.755921
Target:  5'- gGGCgGGAaccaaucacCCGGCGCGauUUGGCgcccGCGGg -3'
miRNA:   3'- -UCGgCCUc--------GGCCGCGU--AACCGa---CGUC- -5'
14636 5' -61.4 NC_003521.1 + 64760 0.66 0.727307
Target:  5'- cGCCG--GCCGGCGCGgcaccgGGCgaucccaagcgccUGCAGa -3'
miRNA:   3'- uCGGCcuCGGCCGCGUaa----CCG-------------ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 33249 0.66 0.736626
Target:  5'- gAGCUGGcacacgcgcagcaGGCCGGCGCGaucgUGcagcaGCUGCGa -3'
miRNA:   3'- -UCGGCC-------------UCGGCCGCGUa---AC-----CGACGUc -5'
14636 5' -61.4 NC_003521.1 + 142908 0.66 0.737554
Target:  5'- cGCCaucAGCCGGCGaCGUcGGCguUGCAGc -3'
miRNA:   3'- uCGGcc-UCGGCCGC-GUAaCCG--ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 169121 0.66 0.737554
Target:  5'- uAGCgGGGGCCaGCGacUUGGagaUGCGGg -3'
miRNA:   3'- -UCGgCCUCGGcCGCguAACCg--ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 56191 0.66 0.737554
Target:  5'- aAGCCGGuGaCGGCGCA--GGuCUGUAc -3'
miRNA:   3'- -UCGGCCuCgGCCGCGUaaCC-GACGUc -5'
14636 5' -61.4 NC_003521.1 + 167069 0.66 0.725434
Target:  5'- cGCCGGuGCCGGCccacauguagaagaGCA---GCUGCAc -3'
miRNA:   3'- uCGGCCuCGGCCG--------------CGUaacCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 16074 0.66 0.755921
Target:  5'- uGCCGGAGCCccgacGCGC--UGGCcgccUGCGu -3'
miRNA:   3'- uCGGCCUCGGc----CGCGuaACCG----ACGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.