miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14636 5' -61.4 NC_003521.1 + 87 0.67 0.690327
Target:  5'- gGGCCGGccGGUCGGaCGUGUUucgGGCcgGCGGg -3'
miRNA:   3'- -UCGGCC--UCGGCC-GCGUAA---CCGa-CGUC- -5'
14636 5' -61.4 NC_003521.1 + 358 0.69 0.583849
Target:  5'- uGCCGGAGgCGGCGCcugcgaccGCUGCc- -3'
miRNA:   3'- uCGGCCUCgGCCGCGuaac----CGACGuc -5'
14636 5' -61.4 NC_003521.1 + 2942 0.67 0.699891
Target:  5'- aAGCCGGGGUCGGCaguccaaCGUU-GCUGUAa -3'
miRNA:   3'- -UCGGCCUCGGCCGc------GUAAcCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 6813 0.66 0.759549
Target:  5'- aAGaCCGGAGCCgauccagaccaggagGGCGCcgaggaGGUUGUAGu -3'
miRNA:   3'- -UC-GGCCUCGG---------------CCGCGuaa---CCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 13895 0.76 0.256886
Target:  5'- cGCCGGGGggcCCGGCGCGgagggGGCcGCGGa -3'
miRNA:   3'- uCGGCCUC---GGCCGCGUaa---CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 13966 0.69 0.558921
Target:  5'- cGCUGGAGCCcugaugggccugcccGGCGCGgcGGCggGCGa -3'
miRNA:   3'- uCGGCCUCGG---------------CCGCGUaaCCGa-CGUc -5'
14636 5' -61.4 NC_003521.1 + 15871 0.69 0.56465
Target:  5'- gAGaCGGAGCUGGUGCucuguaugGGCgGCAGc -3'
miRNA:   3'- -UCgGCCUCGGCCGCGuaa-----CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 16074 0.66 0.755921
Target:  5'- uGCCGGAGCCccgacGCGC--UGGCcgccUGCGu -3'
miRNA:   3'- uCGGCCUCGGc----CGCGuaACCG----ACGUc -5'
14636 5' -61.4 NC_003521.1 + 17356 0.71 0.45433
Target:  5'- gGGCCGuGAcGCCGGCGCGgcGGCc-CAGa -3'
miRNA:   3'- -UCGGC-CU-CGGCCGCGUaaCCGacGUC- -5'
14636 5' -61.4 NC_003521.1 + 18697 0.7 0.499048
Target:  5'- cGCCauGGCCGGCGCGauccGGCUGUGGc -3'
miRNA:   3'- uCGGccUCGGCCGCGUaa--CCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 19162 0.67 0.668178
Target:  5'- -aCCGaGAGCaCGGCGCuggUGGCcgacgugcacgagcUGCAGa -3'
miRNA:   3'- ucGGC-CUCG-GCCGCGua-ACCG--------------ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 24406 0.71 0.471075
Target:  5'- gGGCCcgcGGAGCauagaaagccagaCGGCGCAggGGCcgGCGGg -3'
miRNA:   3'- -UCGG---CCUCG-------------GCCGCGUaaCCGa-CGUC- -5'
14636 5' -61.4 NC_003521.1 + 25625 0.69 0.551308
Target:  5'- gGGCUGGcgcuGCUGGCGCGUgaccacgacaucaGGCgGCAGa -3'
miRNA:   3'- -UCGGCCu---CGGCCGCGUAa------------CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 27118 0.7 0.5268
Target:  5'- aGGCCGGuGCgGGCGaacucCAUgaGGUUGCGGg -3'
miRNA:   3'- -UCGGCCuCGgCCGC-----GUAa-CCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 29256 0.72 0.39559
Target:  5'- cGCCGcGAGCgugCGGCGCuacUGGCUGUAc -3'
miRNA:   3'- uCGGC-CUCG---GCCGCGua-ACCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 30222 0.68 0.642005
Target:  5'- cGGCCGGccGuuGGCGUcgc-GCUGCAGg -3'
miRNA:   3'- -UCGGCCu-CggCCGCGuaacCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 31074 0.73 0.341981
Target:  5'- cAGCCGGuacuCCGGCuGCcgUGGCUGCc- -3'
miRNA:   3'- -UCGGCCuc--GGCCG-CGuaACCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 32353 0.75 0.293819
Target:  5'- uGCCGGAGCCGGCGgGacggGGCuuuUGguGg -3'
miRNA:   3'- uCGGCCUCGGCCGCgUaa--CCG---ACguC- -5'
14636 5' -61.4 NC_003521.1 + 33249 0.66 0.736626
Target:  5'- gAGCUGGcacacgcgcagcaGGCCGGCGCGaucgUGcagcaGCUGCGa -3'
miRNA:   3'- -UCGGCC-------------UCGGCCGCGUa---AC-----CGACGUc -5'
14636 5' -61.4 NC_003521.1 + 36691 0.7 0.499048
Target:  5'- aGGCCGGGcuCCGGCGCc-UGGCccgaGCAGg -3'
miRNA:   3'- -UCGGCCUc-GGCCGCGuaACCGa---CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.