miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14636 5' -61.4 NC_003521.1 + 240636 0.67 0.690327
Target:  5'- gGGCCGGccGGUCGGaCGUGUUucgGGCcgGCGGg -3'
miRNA:   3'- -UCGGCC--UCGGCC-GCGUAA---CCGa-CGUC- -5'
14636 5' -61.4 NC_003521.1 + 239830 0.68 0.632291
Target:  5'- aAGCCGuacGGCCGGCcCAgcGGgaGCAGa -3'
miRNA:   3'- -UCGGCc--UCGGCCGcGUaaCCgaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 239776 0.67 0.690327
Target:  5'- aGGUCGGuggccccgacGCCGGC-CAUcUGGCUGCGc -3'
miRNA:   3'- -UCGGCCu---------CGGCCGcGUA-ACCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 239561 0.7 0.5268
Target:  5'- cGGCUaGGGUCaGCGUGUUGcGCUGCAGg -3'
miRNA:   3'- -UCGGcCUCGGcCGCGUAAC-CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 236253 0.68 0.622576
Target:  5'- -aCCGGAgGCCGGCGUGUgccccGGCcGUAGu -3'
miRNA:   3'- ucGGCCU-CGGCCGCGUAa----CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 234669 1.07 0.001676
Target:  5'- gAGCCGGAGCCGGCGCAUUGGCUGCAGu -3'
miRNA:   3'- -UCGGCCUCGGCCGCGUAACCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 224531 0.67 0.718856
Target:  5'- cGCCGG-GCCGGUagGCAccccGGCgcccaGCAGg -3'
miRNA:   3'- uCGGCCuCGGCCG--CGUaa--CCGa----CGUC- -5'
14636 5' -61.4 NC_003521.1 + 224406 0.66 0.773894
Target:  5'- cAGCCGGuacaccucgccGGCCaGGCGCugcgUGGUggGCGa -3'
miRNA:   3'- -UCGGCC-----------UCGG-CCGCGua--ACCGa-CGUc -5'
14636 5' -61.4 NC_003521.1 + 223224 0.66 0.773006
Target:  5'- cGCCGcGAcGCCuGGCGCGUccagccgUGGCaacgaagGCGGa -3'
miRNA:   3'- uCGGC-CU-CGG-CCGCGUA-------ACCGa------CGUC- -5'
14636 5' -61.4 NC_003521.1 + 222763 0.66 0.764961
Target:  5'- cGGCCacggcgucgguGGGGUCGGCGCAgaGGaacuuCUGCAc -3'
miRNA:   3'- -UCGG-----------CCUCGGCCGCGUaaCC-----GACGUc -5'
14636 5' -61.4 NC_003521.1 + 221906 0.68 0.610929
Target:  5'- uGCCGGcGCgCGGCGCcacccuucggGGCUGCc- -3'
miRNA:   3'- uCGGCCuCG-GCCGCGuaa-------CCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 214549 0.66 0.764961
Target:  5'- uGGCCucGAGaCCGGUGCcugGGgUGCAGc -3'
miRNA:   3'- -UCGGc-CUC-GGCCGCGuaaCCgACGUC- -5'
14636 5' -61.4 NC_003521.1 + 212284 0.66 0.736626
Target:  5'- aGGCUGGccagggcgaaGGCCGGCaugggcacgcagGCGUUGauacucgccacguGCUGCAGg -3'
miRNA:   3'- -UCGGCC----------UCGGCCG------------CGUAAC-------------CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 211460 0.68 0.661405
Target:  5'- cGGUCGGGGCaggccaugaGGCGCAg-GGC-GCAGc -3'
miRNA:   3'- -UCGGCCUCGg--------CCGCGUaaCCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 207922 0.71 0.480913
Target:  5'- cGCCGGGGgCGGCGgGcacGGCgGCAGc -3'
miRNA:   3'- uCGGCCUCgGCCGCgUaa-CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 207572 0.71 0.484514
Target:  5'- cGCCGGccuGCUGGCGUGUgccagcucaacgccGGCUGCAa -3'
miRNA:   3'- uCGGCCu--CGGCCGCGUAa-------------CCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 200315 0.67 0.690327
Target:  5'- gGGCCGGccGGUCGGaCGUGUuucgGGCcgGCGGg -3'
miRNA:   3'- -UCGGCC--UCGGCC-GCGUAa---CCGa-CGUC- -5'
14636 5' -61.4 NC_003521.1 + 198377 0.67 0.718856
Target:  5'- cGCCGGA--CGGCGUugUGGCggGCGGc -3'
miRNA:   3'- uCGGCCUcgGCCGCGuaACCGa-CGUC- -5'
14636 5' -61.4 NC_003521.1 + 197855 0.71 0.463103
Target:  5'- cGGUgGGcGCCGGCGgGUcgcgcucgcugGGCUGCAGg -3'
miRNA:   3'- -UCGgCCuCGGCCGCgUAa----------CCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 196766 0.66 0.755921
Target:  5'- uGCCccGGCCGGCGCGaccgcgGGC-GCGGu -3'
miRNA:   3'- uCGGccUCGGCCGCGUaa----CCGaCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.