miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14636 5' -61.4 NC_003521.1 + 196066 0.7 0.536181
Target:  5'- aGGCCGGcgagguGGaCUGGCGCGagaGCUGCAGa -3'
miRNA:   3'- -UCGGCC------UC-GGCCGCGUaacCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 195612 0.74 0.320666
Target:  5'- cAGCCGGcccgccAGCUGGuCGCGUUG-CUGCAGc -3'
miRNA:   3'- -UCGGCC------UCGGCC-GCGUAACcGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 195191 0.68 0.612869
Target:  5'- --gCGGAGCCGGCGgCggUGGCcgucUGCGu -3'
miRNA:   3'- ucgGCCUCGGCCGC-GuaACCG----ACGUc -5'
14636 5' -61.4 NC_003521.1 + 194723 0.68 0.661405
Target:  5'- cGuCCGGAGgCGGCGCuacaaGGuCUGCGa -3'
miRNA:   3'- uC-GGCCUCgGCCGCGuaa--CC-GACGUc -5'
14636 5' -61.4 NC_003521.1 + 193375 0.66 0.746783
Target:  5'- cGaCCaGGAGUgCGGCGCcc-GGCUGCAu -3'
miRNA:   3'- uC-GG-CCUCG-GCCGCGuaaCCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 193297 0.76 0.245448
Target:  5'- cGUCGGAGUCGGCGCGggggUGGUggGCAc -3'
miRNA:   3'- uCGGCCUCGGCCGCGUa---ACCGa-CGUc -5'
14636 5' -61.4 NC_003521.1 + 190524 0.66 0.728242
Target:  5'- uGGCUgaGGAGCgaGGUGCGgcGGCaGCAGc -3'
miRNA:   3'- -UCGG--CCUCGg-CCGCGUaaCCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 188031 0.68 0.632291
Target:  5'- cGUCGGAcaucaGCCGGUGCAgcgGGUUGUc- -3'
miRNA:   3'- uCGGCCU-----CGGCCGCGUaa-CCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 186755 0.72 0.403679
Target:  5'- uGCUGGGGCuCGGCgGCAUcGGCggagGCGGc -3'
miRNA:   3'- uCGGCCUCG-GCCG-CGUAaCCGa---CGUC- -5'
14636 5' -61.4 NC_003521.1 + 186619 0.67 0.718856
Target:  5'- uGCCGGAcaCCGGCcaGCAgcggucgGGCUGCu- -3'
miRNA:   3'- uCGGCCUc-GGCCG--CGUaa-----CCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 180810 0.7 0.517482
Target:  5'- aGGCCGGuGCUGucGCGCu---GCUGCAGg -3'
miRNA:   3'- -UCGGCCuCGGC--CGCGuaacCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 180500 0.67 0.690327
Target:  5'- uGGCCGGcugcaucagcGCCGucuGCGCGUagGcGCUGCAGg -3'
miRNA:   3'- -UCGGCCu---------CGGC---CGCGUAa-C-CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 179049 0.7 0.499048
Target:  5'- cGCCGGAGCCGGCgGCGgucccGGUgaCGGg -3'
miRNA:   3'- uCGGCCUCGGCCG-CGUaa---CCGacGUC- -5'
14636 5' -61.4 NC_003521.1 + 177730 0.67 0.708454
Target:  5'- uGCUGGAgggcgggcagcgcGCCGGCGCAgcuguacggGGUcGCGGu -3'
miRNA:   3'- uCGGCCU-------------CGGCCGCGUaa-------CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 176072 0.67 0.671077
Target:  5'- uGCCGcGccGGCCGGCGUcUUGGCcacgGCGu -3'
miRNA:   3'- uCGGC-C--UCGGCCGCGuAACCGa---CGUc -5'
14636 5' -61.4 NC_003521.1 + 175790 0.69 0.597366
Target:  5'- uAGCCGGGGCUGcacgcgggccaggauGCGCGUgcuaggGGC-GCGGu -3'
miRNA:   3'- -UCGGCCUCGGC---------------CGCGUAa-----CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 173533 0.67 0.709403
Target:  5'- cGUCGGGcGUCaGGCGCAgcGGCUGUc- -3'
miRNA:   3'- uCGGCCU-CGG-CCGCGUaaCCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 170869 0.68 0.632291
Target:  5'- cGCgGGGGCgGGCGCGggUGGUcagGCGu -3'
miRNA:   3'- uCGgCCUCGgCCGCGUa-ACCGa--CGUc -5'
14636 5' -61.4 NC_003521.1 + 170107 0.66 0.755921
Target:  5'- uGCCGGuacauCCGGCGCA--GGCgccgacGCAGc -3'
miRNA:   3'- uCGGCCuc---GGCCGCGUaaCCGa-----CGUC- -5'
14636 5' -61.4 NC_003521.1 + 169331 0.67 0.718856
Target:  5'- cGUCGcGGCCGGCGUGguuucgGGUUGCGc -3'
miRNA:   3'- uCGGCcUCGGCCGCGUaa----CCGACGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.