Results 21 - 40 of 130 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 27118 | 0.7 | 0.5268 |
Target: 5'- aGGCCGGuGCgGGCGaacucCAUgaGGUUGCGGg -3' miRNA: 3'- -UCGGCCuCGgCCGC-----GUAa-CCGACGUC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 234669 | 1.07 | 0.001676 |
Target: 5'- gAGCCGGAGCCGGCGCAUUGGCUGCAGu -3' miRNA: 3'- -UCGGCCUCGGCCGCGUAACCGACGUC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 193297 | 0.76 | 0.245448 |
Target: 5'- cGUCGGAGUCGGCGCGggggUGGUggGCAc -3' miRNA: 3'- uCGGCCUCGGCCGCGUa---ACCGa-CGUc -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 32353 | 0.75 | 0.293819 |
Target: 5'- uGCCGGAGCCGGCGgGacggGGCuuuUGguGg -3' miRNA: 3'- uCGGCCUCGGCCGCgUaa--CCG---ACguC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 195612 | 0.74 | 0.320666 |
Target: 5'- cAGCCGGcccgccAGCUGGuCGCGUUG-CUGCAGc -3' miRNA: 3'- -UCGGCC------UCGGCC-GCGUAACcGACGUC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 138031 | 0.73 | 0.349309 |
Target: 5'- cGUCGcuGCCGGCGCAcggGGCUGUGGg -3' miRNA: 3'- uCGGCcuCGGCCGCGUaa-CCGACGUC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 138696 | 0.73 | 0.349309 |
Target: 5'- aGGCCGuGAGCCugggcggcacgGGCGC--UGGCUGguGg -3' miRNA: 3'- -UCGGC-CUCGG-----------CCGCGuaACCGACguC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 118719 | 0.73 | 0.356749 |
Target: 5'- gGGCgaGGGGCgCGGCaccgGCAcgGGCUGCAGg -3' miRNA: 3'- -UCGg-CCUCG-GCCG----CGUaaCCGACGUC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 168544 | 0.73 | 0.356749 |
Target: 5'- cAGCgCGGcGgCGGCGCuggcgGGCUGCGGg -3' miRNA: 3'- -UCG-GCCuCgGCCGCGuaa--CCGACGUC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 105593 | 0.73 | 0.356749 |
Target: 5'- cGCCGccGCCGGCGCAgccgcucagGcGCUGCAGc -3' miRNA: 3'- uCGGCcuCGGCCGCGUaa-------C-CGACGUC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 153090 | 0.73 | 0.378947 |
Target: 5'- gGGCCGGGGCCcaccacgccgccgGGCGCGcgcgacGGCaGCAGg -3' miRNA: 3'- -UCGGCCUCGG-------------CCGCGUaa----CCGaCGUC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 137247 | 0.72 | 0.39559 |
Target: 5'- cGGCCGGGGCCgacGGCgGCAgcgGGCagaGCGGg -3' miRNA: 3'- -UCGGCCUCGG---CCG-CGUaa-CCGa--CGUC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 118312 | 0.72 | 0.39559 |
Target: 5'- cGCCGGccugcccGCCGcCGCGUUGGCccUGCAGa -3' miRNA: 3'- uCGGCCu------CGGCcGCGUAACCG--ACGUC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 100625 | 0.72 | 0.417668 |
Target: 5'- uGGCCGGGGgaccucgaaaaCCGGCcgucccgccgcguuGCGUcGGCUGCGGa -3' miRNA: 3'- -UCGGCCUC-----------GGCCG--------------CGUAaCCGACGUC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 92004 | 0.71 | 0.445646 |
Target: 5'- gAGCgGGAGCggcgaGGCGCGgcGGCgGCGGc -3' miRNA: 3'- -UCGgCCUCGg----CCGCGUaaCCGaCGUC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 166135 | 0.71 | 0.46841 |
Target: 5'- cGGCCGGcaGGUCGGCGUAguauuuauccagGcGCUGCAGc -3' miRNA: 3'- -UCGGCC--UCGGCCGCGUaa----------C-CGACGUC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 24406 | 0.71 | 0.471075 |
Target: 5'- gGGCCcgcGGAGCauagaaagccagaCGGCGCAggGGCcgGCGGg -3' miRNA: 3'- -UCGG---CCUCG-------------GCCGCGUaaCCGa-CGUC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 18697 | 0.7 | 0.499048 |
Target: 5'- cGCCauGGCCGGCGCGauccGGCUGUGGc -3' miRNA: 3'- uCGGccUCGGCCGCGUaa--CCGACGUC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 116736 | 0.7 | 0.513773 |
Target: 5'- -cCCGGAGUCGGCGCccuucaaacacgUGGCUuguGCAGc -3' miRNA: 3'- ucGGCCUCGGCCGCGua----------ACCGA---CGUC- -5' |
|||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 239561 | 0.7 | 0.5268 |
Target: 5'- cGGCUaGGGUCaGCGUGUUGcGCUGCAGg -3' miRNA: 3'- -UCGGcCUCGGcCGCGUAAC-CGACGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home