Results 21 - 40 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 25625 | 0.69 | 0.551308 |
Target: 5'- gGGCUGGcgcuGCUGGCGCGUgaccacgacaucaGGCgGCAGa -3' miRNA: 3'- -UCGGCCu---CGGCCGCGUAa------------CCGaCGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 111238 | 0.7 | 0.5268 |
Target: 5'- cGUCGcGGCCGGCGCGgcgcGGCggaGCAGc -3' miRNA: 3'- uCGGCcUCGGCCGCGUaa--CCGa--CGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 149713 | 0.71 | 0.463103 |
Target: 5'- uGCCGGGGaauccccgaCCGGCGCA--GGC-GCAGa -3' miRNA: 3'- uCGGCCUC---------GGCCGCGUaaCCGaCGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 64440 | 0.73 | 0.37196 |
Target: 5'- uAGCCGGGaaCGGUGCAUUGGaacGCGGa -3' miRNA: 3'- -UCGGCCUcgGCCGCGUAACCga-CGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 170869 | 0.68 | 0.632291 |
Target: 5'- cGCgGGGGCgGGCGCGggUGGUcagGCGu -3' miRNA: 3'- uCGgCCUCGgCCGCGUa-ACCGa--CGUc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 129065 | 0.69 | 0.593499 |
Target: 5'- cGCCcuuGAGCUGGCGCAgacccucGGCguacUGCAGg -3' miRNA: 3'- uCGGc--CUCGGCCGCGUaa-----CCG----ACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 180810 | 0.7 | 0.517482 |
Target: 5'- aGGCCGGuGCUGucGCGCu---GCUGCAGg -3' miRNA: 3'- -UCGGCCuCGGC--CGCGuaacCGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 31074 | 0.73 | 0.341981 |
Target: 5'- cAGCCGGuacuCCGGCuGCcgUGGCUGCc- -3' miRNA: 3'- -UCGGCCuc--GGCCG-CGuaACCGACGuc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 151527 | 0.69 | 0.583849 |
Target: 5'- cGGCCaGAGgCGGCGCGgacgcgGGUUGUAc -3' miRNA: 3'- -UCGGcCUCgGCCGCGUaa----CCGACGUc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 123666 | 0.74 | 0.334764 |
Target: 5'- aGGCUuggagGGAGCCGGCGCGcugcGGCgugGCGGu -3' miRNA: 3'- -UCGG-----CCUCGGCCGCGUaa--CCGa--CGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 39334 | 0.7 | 0.5268 |
Target: 5'- cGGCUaGGGUCaGCGUGUUGcGCUGCAGg -3' miRNA: 3'- -UCGGcCUCGGcCGCGUAAC-CGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 13966 | 0.69 | 0.558921 |
Target: 5'- cGCUGGAGCCcugaugggccugcccGGCGCGgcGGCggGCGa -3' miRNA: 3'- uCGGCCUCGG---------------CCGCGUaaCCGa-CGUc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 179049 | 0.7 | 0.499048 |
Target: 5'- cGCCGGAGCCGGCgGCGgucccGGUgaCGGg -3' miRNA: 3'- uCGGCCUCGGCCG-CGUaa---CCGacGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 207922 | 0.71 | 0.480913 |
Target: 5'- cGCCGGGGgCGGCGgGcacGGCgGCAGc -3' miRNA: 3'- uCGGCCUCgGCCGCgUaa-CCGaCGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 17356 | 0.71 | 0.45433 |
Target: 5'- gGGCCGuGAcGCCGGCGCGgcGGCc-CAGa -3' miRNA: 3'- -UCGGC-CU-CGGCCGCGUaaCCGacGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 29256 | 0.72 | 0.39559 |
Target: 5'- cGCCGcGAGCgugCGGCGCuacUGGCUGUAc -3' miRNA: 3'- uCGGC-CUCG---GCCGCGua-ACCGACGUc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 211460 | 0.68 | 0.661405 |
Target: 5'- cGGUCGGGGCaggccaugaGGCGCAg-GGC-GCAGc -3' miRNA: 3'- -UCGGCCUCGg--------CCGCGUaaCCGaCGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 168065 | 0.68 | 0.632291 |
Target: 5'- cGGCgGGuGCuCGaGaCGCGgggGGCUGCAGa -3' miRNA: 3'- -UCGgCCuCG-GC-C-GCGUaa-CCGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 236253 | 0.68 | 0.622576 |
Target: 5'- -aCCGGAgGCCGGCGUGUgccccGGCcGUAGu -3' miRNA: 3'- ucGGCCU-CGGCCGCGUAa----CCGaCGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 175790 | 0.69 | 0.597366 |
Target: 5'- uAGCCGGGGCUGcacgcgggccaggauGCGCGUgcuaggGGC-GCGGu -3' miRNA: 3'- -UCGGCCUCGGC---------------CGCGUAa-----CCGaCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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