miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14636 5' -61.4 NC_003521.1 + 121103 0.7 0.50823
Target:  5'- gGGCCGGGGCCauccCGCugaGGCUGguGg -3'
miRNA:   3'- -UCGGCCUCGGcc--GCGuaaCCGACguC- -5'
14636 5' -61.4 NC_003521.1 + 13895 0.76 0.256886
Target:  5'- cGCCGGGGggcCCGGCGCGgagggGGCcGCGGa -3'
miRNA:   3'- uCGGCCUC---GGCCGCGUaa---CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 123666 0.74 0.334764
Target:  5'- aGGCUuggagGGAGCCGGCGCGcugcGGCgugGCGGu -3'
miRNA:   3'- -UCGG-----CCUCGGCCGCGUaa--CCGa--CGUC- -5'
14636 5' -61.4 NC_003521.1 + 197855 0.71 0.463103
Target:  5'- cGGUgGGcGCCGGCGgGUcgcgcucgcugGGCUGCAGg -3'
miRNA:   3'- -UCGgCCuCGGCCGCgUAa----------CCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 149713 0.71 0.463103
Target:  5'- uGCCGGGGaauccccgaCCGGCGCA--GGC-GCAGa -3'
miRNA:   3'- uCGGCCUC---------GGCCGCGUaaCCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 31074 0.73 0.341981
Target:  5'- cAGCCGGuacuCCGGCuGCcgUGGCUGCc- -3'
miRNA:   3'- -UCGGCCuc--GGCCG-CGuaACCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 186755 0.72 0.403679
Target:  5'- uGCUGGGGCuCGGCgGCAUcGGCggagGCGGc -3'
miRNA:   3'- uCGGCCUCG-GCCG-CGUAaCCGa---CGUC- -5'
14636 5' -61.4 NC_003521.1 + 127777 0.71 0.45433
Target:  5'- uGCUGGAGCaCGGCGCGUUugugaaagaGGC-GCAc -3'
miRNA:   3'- uCGGCCUCG-GCCGCGUAA---------CCGaCGUc -5'
14636 5' -61.4 NC_003521.1 + 179049 0.7 0.499048
Target:  5'- cGCCGGAGCCGGCgGCGgucccGGUgaCGGg -3'
miRNA:   3'- uCGGCCUCGGCCG-CGUaa---CCGacGUC- -5'
14636 5' -61.4 NC_003521.1 + 39334 0.7 0.5268
Target:  5'- cGGCUaGGGUCaGCGUGUUGcGCUGCAGg -3'
miRNA:   3'- -UCGGcCUCGGcCGCGUAAC-CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 223224 0.66 0.773006
Target:  5'- cGCCGcGAcGCCuGGCGCGUccagccgUGGCaacgaagGCGGa -3'
miRNA:   3'- uCGGC-CU-CGG-CCGCGUA-------ACCGa------CGUC- -5'
14636 5' -61.4 NC_003521.1 + 29256 0.72 0.39559
Target:  5'- cGCCGcGAGCgugCGGCGCuacUGGCUGUAc -3'
miRNA:   3'- uCGGC-CUCG---GCCGCGua-ACCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 64440 0.73 0.37196
Target:  5'- uAGCCGGGaaCGGUGCAUUGGaacGCGGa -3'
miRNA:   3'- -UCGGCCUcgGCCGCGUAACCga-CGUC- -5'
14636 5' -61.4 NC_003521.1 + 207572 0.71 0.484514
Target:  5'- cGCCGGccuGCUGGCGUGUgccagcucaacgccGGCUGCAa -3'
miRNA:   3'- uCGGCCu--CGGCCGCGUAa-------------CCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 36691 0.7 0.499048
Target:  5'- aGGCCGGGcuCCGGCGCc-UGGCccgaGCAGg -3'
miRNA:   3'- -UCGGCCUc-GGCCGCGuaACCGa---CGUC- -5'
14636 5' -61.4 NC_003521.1 + 110833 0.72 0.39559
Target:  5'- cGCCGccGCCGGCGCAgcGGCaGCGa -3'
miRNA:   3'- uCGGCcuCGGCCGCGUaaCCGaCGUc -5'
14636 5' -61.4 NC_003521.1 + 180810 0.7 0.517482
Target:  5'- aGGCCGGuGCUGucGCGCu---GCUGCAGg -3'
miRNA:   3'- -UCGGCCuCGGC--CGCGuaacCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 111238 0.7 0.5268
Target:  5'- cGUCGcGGCCGGCGCGgcgcGGCggaGCAGc -3'
miRNA:   3'- uCGGCcUCGGCCGCGUaa--CCGa--CGUC- -5'
14636 5' -61.4 NC_003521.1 + 17356 0.71 0.45433
Target:  5'- gGGCCGuGAcGCCGGCGCGgcGGCc-CAGa -3'
miRNA:   3'- -UCGGC-CU-CGGCCGCGUaaCCGacGUC- -5'
14636 5' -61.4 NC_003521.1 + 207922 0.71 0.480913
Target:  5'- cGCCGGGGgCGGCGgGcacGGCgGCAGc -3'
miRNA:   3'- uCGGCCUCgGCCGCgUaa-CCGaCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.