Results 1 - 20 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14636 | 5' | -61.4 | NC_003521.1 | + | 234669 | 1.07 | 0.001676 |
Target: 5'- gAGCCGGAGCCGGCGCAUUGGCUGCAGu -3' miRNA: 3'- -UCGGCCUCGGCCGCGUAACCGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 121414 | 0.76 | 0.234435 |
Target: 5'- cGCUGGuGCUuGCGCAUgaagGGCUGCGGg -3' miRNA: 3'- uCGGCCuCGGcCGCGUAa---CCGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 193297 | 0.76 | 0.245448 |
Target: 5'- cGUCGGAGUCGGCGCGggggUGGUggGCAc -3' miRNA: 3'- uCGGCCUCGGCCGCGUa---ACCGa-CGUc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 13895 | 0.76 | 0.256886 |
Target: 5'- cGCCGGGGggcCCGGCGCGgagggGGCcGCGGa -3' miRNA: 3'- uCGGCCUC---GGCCGCGUaa---CCGaCGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 32353 | 0.75 | 0.293819 |
Target: 5'- uGCCGGAGCCGGCGgGacggGGCuuuUGguGg -3' miRNA: 3'- uCGGCCUCGGCCGCgUaa--CCG---ACguC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 195612 | 0.74 | 0.320666 |
Target: 5'- cAGCCGGcccgccAGCUGGuCGCGUUG-CUGCAGc -3' miRNA: 3'- -UCGGCC------UCGGCC-GCGUAACcGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 123666 | 0.74 | 0.334764 |
Target: 5'- aGGCUuggagGGAGCCGGCGCGcugcGGCgugGCGGu -3' miRNA: 3'- -UCGG-----CCUCGGCCGCGUaa--CCGa--CGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 31074 | 0.73 | 0.341981 |
Target: 5'- cAGCCGGuacuCCGGCuGCcgUGGCUGCc- -3' miRNA: 3'- -UCGGCCuc--GGCCG-CGuaACCGACGuc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 138031 | 0.73 | 0.349309 |
Target: 5'- cGUCGcuGCCGGCGCAcggGGCUGUGGg -3' miRNA: 3'- uCGGCcuCGGCCGCGUaa-CCGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 138696 | 0.73 | 0.349309 |
Target: 5'- aGGCCGuGAGCCugggcggcacgGGCGC--UGGCUGguGg -3' miRNA: 3'- -UCGGC-CUCGG-----------CCGCGuaACCGACguC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 105593 | 0.73 | 0.356749 |
Target: 5'- cGCCGccGCCGGCGCAgccgcucagGcGCUGCAGc -3' miRNA: 3'- uCGGCcuCGGCCGCGUaa-------C-CGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 168544 | 0.73 | 0.356749 |
Target: 5'- cAGCgCGGcGgCGGCGCuggcgGGCUGCGGg -3' miRNA: 3'- -UCG-GCCuCgGCCGCGuaa--CCGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 118719 | 0.73 | 0.356749 |
Target: 5'- gGGCgaGGGGCgCGGCaccgGCAcgGGCUGCAGg -3' miRNA: 3'- -UCGg-CCUCG-GCCG----CGUaaCCGACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 64440 | 0.73 | 0.37196 |
Target: 5'- uAGCCGGGaaCGGUGCAUUGGaacGCGGa -3' miRNA: 3'- -UCGGCCUcgGCCGCGUAACCga-CGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 153090 | 0.73 | 0.378947 |
Target: 5'- gGGCCGGGGCCcaccacgccgccgGGCGCGcgcgacGGCaGCAGg -3' miRNA: 3'- -UCGGCCUCGG-------------CCGCGUaa----CCGaCGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 137247 | 0.72 | 0.39559 |
Target: 5'- cGGCCGGGGCCgacGGCgGCAgcgGGCagaGCGGg -3' miRNA: 3'- -UCGGCCUCGG---CCG-CGUaa-CCGa--CGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 118312 | 0.72 | 0.39559 |
Target: 5'- cGCCGGccugcccGCCGcCGCGUUGGCccUGCAGa -3' miRNA: 3'- uCGGCCu------CGGCcGCGUAACCG--ACGUC- -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 110833 | 0.72 | 0.39559 |
Target: 5'- cGCCGccGCCGGCGCAgcGGCaGCGa -3' miRNA: 3'- uCGGCcuCGGCCGCGUaaCCGaCGUc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 29256 | 0.72 | 0.39559 |
Target: 5'- cGCCGcGAGCgugCGGCGCuacUGGCUGUAc -3' miRNA: 3'- uCGGC-CUCG---GCCGCGua-ACCGACGUc -5' |
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14636 | 5' | -61.4 | NC_003521.1 | + | 186755 | 0.72 | 0.403679 |
Target: 5'- uGCUGGGGCuCGGCgGCAUcGGCggagGCGGc -3' miRNA: 3'- uCGGCCUCG-GCCG-CGUAaCCGa---CGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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