miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14636 5' -61.4 NC_003521.1 + 234669 1.07 0.001676
Target:  5'- gAGCCGGAGCCGGCGCAUUGGCUGCAGu -3'
miRNA:   3'- -UCGGCCUCGGCCGCGUAACCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 121414 0.76 0.234435
Target:  5'- cGCUGGuGCUuGCGCAUgaagGGCUGCGGg -3'
miRNA:   3'- uCGGCCuCGGcCGCGUAa---CCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 193297 0.76 0.245448
Target:  5'- cGUCGGAGUCGGCGCGggggUGGUggGCAc -3'
miRNA:   3'- uCGGCCUCGGCCGCGUa---ACCGa-CGUc -5'
14636 5' -61.4 NC_003521.1 + 13895 0.76 0.256886
Target:  5'- cGCCGGGGggcCCGGCGCGgagggGGCcGCGGa -3'
miRNA:   3'- uCGGCCUC---GGCCGCGUaa---CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 32353 0.75 0.293819
Target:  5'- uGCCGGAGCCGGCGgGacggGGCuuuUGguGg -3'
miRNA:   3'- uCGGCCUCGGCCGCgUaa--CCG---ACguC- -5'
14636 5' -61.4 NC_003521.1 + 195612 0.74 0.320666
Target:  5'- cAGCCGGcccgccAGCUGGuCGCGUUG-CUGCAGc -3'
miRNA:   3'- -UCGGCC------UCGGCC-GCGUAACcGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 123666 0.74 0.334764
Target:  5'- aGGCUuggagGGAGCCGGCGCGcugcGGCgugGCGGu -3'
miRNA:   3'- -UCGG-----CCUCGGCCGCGUaa--CCGa--CGUC- -5'
14636 5' -61.4 NC_003521.1 + 31074 0.73 0.341981
Target:  5'- cAGCCGGuacuCCGGCuGCcgUGGCUGCc- -3'
miRNA:   3'- -UCGGCCuc--GGCCG-CGuaACCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 138696 0.73 0.349309
Target:  5'- aGGCCGuGAGCCugggcggcacgGGCGC--UGGCUGguGg -3'
miRNA:   3'- -UCGGC-CUCGG-----------CCGCGuaACCGACguC- -5'
14636 5' -61.4 NC_003521.1 + 138031 0.73 0.349309
Target:  5'- cGUCGcuGCCGGCGCAcggGGCUGUGGg -3'
miRNA:   3'- uCGGCcuCGGCCGCGUaa-CCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 118719 0.73 0.356749
Target:  5'- gGGCgaGGGGCgCGGCaccgGCAcgGGCUGCAGg -3'
miRNA:   3'- -UCGg-CCUCG-GCCG----CGUaaCCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 168544 0.73 0.356749
Target:  5'- cAGCgCGGcGgCGGCGCuggcgGGCUGCGGg -3'
miRNA:   3'- -UCG-GCCuCgGCCGCGuaa--CCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 105593 0.73 0.356749
Target:  5'- cGCCGccGCCGGCGCAgccgcucagGcGCUGCAGc -3'
miRNA:   3'- uCGGCcuCGGCCGCGUaa-------C-CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 64440 0.73 0.37196
Target:  5'- uAGCCGGGaaCGGUGCAUUGGaacGCGGa -3'
miRNA:   3'- -UCGGCCUcgGCCGCGUAACCga-CGUC- -5'
14636 5' -61.4 NC_003521.1 + 153090 0.73 0.378947
Target:  5'- gGGCCGGGGCCcaccacgccgccgGGCGCGcgcgacGGCaGCAGg -3'
miRNA:   3'- -UCGGCCUCGG-------------CCGCGUaa----CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 110833 0.72 0.39559
Target:  5'- cGCCGccGCCGGCGCAgcGGCaGCGa -3'
miRNA:   3'- uCGGCcuCGGCCGCGUaaCCGaCGUc -5'
14636 5' -61.4 NC_003521.1 + 29256 0.72 0.39559
Target:  5'- cGCCGcGAGCgugCGGCGCuacUGGCUGUAc -3'
miRNA:   3'- uCGGC-CUCG---GCCGCGua-ACCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 118312 0.72 0.39559
Target:  5'- cGCCGGccugcccGCCGcCGCGUUGGCccUGCAGa -3'
miRNA:   3'- uCGGCCu------CGGCcGCGUAACCG--ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 137247 0.72 0.39559
Target:  5'- cGGCCGGGGCCgacGGCgGCAgcgGGCagaGCGGg -3'
miRNA:   3'- -UCGGCCUCGG---CCG-CGUaa-CCGa--CGUC- -5'
14636 5' -61.4 NC_003521.1 + 186755 0.72 0.403679
Target:  5'- uGCUGGGGCuCGGCgGCAUcGGCggagGCGGc -3'
miRNA:   3'- uCGGCCUCG-GCCG-CGUAaCCGa---CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.