miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14636 5' -61.4 NC_003521.1 + 39013 0.69 0.555111
Target:  5'- aGGCCGGAGCgGGCGCcgccgaaGGaUUGCuGg -3'
miRNA:   3'- -UCGGCCUCGgCCGCGuaa----CC-GACGuC- -5'
14636 5' -61.4 NC_003521.1 + 39334 0.7 0.5268
Target:  5'- cGGCUaGGGUCaGCGUGUUGcGCUGCAGg -3'
miRNA:   3'- -UCGGcCUCGGcCGCGUAAC-CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 39442 0.66 0.755921
Target:  5'- uGCCGGccgAGcCCGGCGCcgagGGCcGCGu -3'
miRNA:   3'- uCGGCC---UC-GGCCGCGuaa-CCGaCGUc -5'
14636 5' -61.4 NC_003521.1 + 39549 0.67 0.690327
Target:  5'- aGGUCGGuggccccgacGCCGGC-CAUcUGGCUGCGc -3'
miRNA:   3'- -UCGGCCu---------CGGCCGcGUA-ACCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 39603 0.68 0.632291
Target:  5'- aAGCCGuacGGCCGGCcCAgcGGgaGCAGa -3'
miRNA:   3'- -UCGGCc--UCGGCCGcGUaaCCgaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 45218 0.66 0.764961
Target:  5'- cAGCUGGcgGGCCGGCuGCGcaaccugGaGCUGUAGc -3'
miRNA:   3'- -UCGGCC--UCGGCCG-CGUaa-----C-CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 46560 0.68 0.622576
Target:  5'- cGCCGGGuGCUGaaGCggUGGUUGCGGu -3'
miRNA:   3'- uCGGCCU-CGGCcgCGuaACCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 48716 0.7 0.545619
Target:  5'- aGGCCGGGagagguggagacGCCGGCGac---GCUGCAGc -3'
miRNA:   3'- -UCGGCCU------------CGGCCGCguaacCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 50958 0.69 0.583849
Target:  5'- aAGCCuu-GCCGGCGUAgUGGUaagucUGCAGg -3'
miRNA:   3'- -UCGGccuCGGCCGCGUaACCG-----ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 54118 0.66 0.773894
Target:  5'- cAGaCCGGAGCCGuCGUcgUGcauGCUGCu- -3'
miRNA:   3'- -UC-GGCCUCGGCcGCGuaAC---CGACGuc -5'
14636 5' -61.4 NC_003521.1 + 56191 0.66 0.737554
Target:  5'- aAGCCGGuGaCGGCGCA--GGuCUGUAc -3'
miRNA:   3'- -UCGGCCuCgGCCGCGUaaCC-GACGUc -5'
14636 5' -61.4 NC_003521.1 + 64440 0.73 0.37196
Target:  5'- uAGCCGGGaaCGGUGCAUUGGaacGCGGa -3'
miRNA:   3'- -UCGGCCUcgGCCGCGUAACCga-CGUC- -5'
14636 5' -61.4 NC_003521.1 + 64760 0.66 0.727307
Target:  5'- cGCCG--GCCGGCGCGgcaccgGGCgaucccaagcgccUGCAGa -3'
miRNA:   3'- uCGGCcuCGGCCGCGUaa----CCG-------------ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 79621 0.67 0.679757
Target:  5'- uGCCGGGGCgaccgcggcgccuCGGCGUcgUcugcuGCUGCAGc -3'
miRNA:   3'- uCGGCCUCG-------------GCCGCGuaAc----CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 87149 0.67 0.667211
Target:  5'- uGuuGGAGCgGGCGCAguucgugcgcgcGGCcgUGCAGc -3'
miRNA:   3'- uCggCCUCGgCCGCGUaa----------CCG--ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 87354 0.66 0.768547
Target:  5'- gAGCCGGAGCCcgaggaggaggccgaGGUGgAggacgaGGCgGCGGa -3'
miRNA:   3'- -UCGGCCUCGG---------------CCGCgUaa----CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 91952 0.66 0.755921
Target:  5'- cGGCCGaGgccaGGCUGGCGUAgcUGGC-GCGGu -3'
miRNA:   3'- -UCGGC-C----UCGGCCGCGUa-ACCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 92004 0.71 0.445646
Target:  5'- gAGCgGGAGCggcgaGGCGCGgcGGCgGCGGc -3'
miRNA:   3'- -UCGgCCUCGg----CCGCGUaaCCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 93111 0.68 0.651712
Target:  5'- gAGCUGGGGuuGGCGguUUGGgauucgguuuCUGgGGa -3'
miRNA:   3'- -UCGGCCUCggCCGCguAACC----------GACgUC- -5'
14636 5' -61.4 NC_003521.1 + 96610 0.68 0.632291
Target:  5'- aGGCaGGcGUCGGCGCAcu-GCUGCAGc -3'
miRNA:   3'- -UCGgCCuCGGCCGCGUaacCGACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.