miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14636 5' -61.4 NC_003521.1 + 98531 0.67 0.699891
Target:  5'- cGGCUGG-GCCGcUGCAgcGGCgGCGGg -3'
miRNA:   3'- -UCGGCCuCGGCcGCGUaaCCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 99587 0.66 0.773894
Target:  5'- uGGUCGaAGaacugCGGCGCGUUGGUgaccUGCAGc -3'
miRNA:   3'- -UCGGCcUCg----GCCGCGUAACCG----ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 100625 0.72 0.417668
Target:  5'- uGGCCGGGGgaccucgaaaaCCGGCcgucccgccgcguuGCGUcGGCUGCGGa -3'
miRNA:   3'- -UCGGCCUC-----------GGCCG--------------CGUAaCCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 102591 0.67 0.670111
Target:  5'- -cUCGGGGCUGGCGC--UGGCcacgucgucgucgUGCAGc -3'
miRNA:   3'- ucGGCCUCGGCCGCGuaACCG-------------ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 103115 0.67 0.718856
Target:  5'- cAGgCGaaGAGCUGGCGCAgcgcgcggcgGuGCUGCAGc -3'
miRNA:   3'- -UCgGC--CUCGGCCGCGUaa--------C-CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 105150 0.66 0.764061
Target:  5'- aGGCCGGAGaCCaauuccaGGCGaCGggGGCUGgAc -3'
miRNA:   3'- -UCGGCCUC-GG-------CCGC-GUaaCCGACgUc -5'
14636 5' -61.4 NC_003521.1 + 105593 0.73 0.356749
Target:  5'- cGCCGccGCCGGCGCAgccgcucagGcGCUGCAGc -3'
miRNA:   3'- uCGGCcuCGGCCGCGUaa-------C-CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 110833 0.72 0.39559
Target:  5'- cGCCGccGCCGGCGCAgcGGCaGCGa -3'
miRNA:   3'- uCGGCcuCGGCCGCGUaaCCGaCGUc -5'
14636 5' -61.4 NC_003521.1 + 111238 0.7 0.5268
Target:  5'- cGUCGcGGCCGGCGCGgcgcGGCggaGCAGc -3'
miRNA:   3'- uCGGCcUCGGCCGCGUaa--CCGa--CGUC- -5'
14636 5' -61.4 NC_003521.1 + 111573 0.67 0.709403
Target:  5'- cGGCU-GAGCCGGCGgGUUccGGaCUGCGu -3'
miRNA:   3'- -UCGGcCUCGGCCGCgUAA--CC-GACGUc -5'
14636 5' -61.4 NC_003521.1 + 113848 0.66 0.737554
Target:  5'- cAGCgGGgcGGCCGGCGaCGacGGC-GCGGg -3'
miRNA:   3'- -UCGgCC--UCGGCCGC-GUaaCCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 113976 0.68 0.612869
Target:  5'- cGGCaGGcGGCCGGCcggGCAccGGCUGCAa -3'
miRNA:   3'- -UCGgCC-UCGGCCG---CGUaaCCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 115376 0.67 0.671077
Target:  5'- uGGCCaGGGCCGGCauguGCAg-GGC-GCGGg -3'
miRNA:   3'- -UCGGcCUCGGCCG----CGUaaCCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 116736 0.7 0.513773
Target:  5'- -cCCGGAGUCGGCGCccuucaaacacgUGGCUuguGCAGc -3'
miRNA:   3'- ucGGCCUCGGCCGCGua----------ACCGA---CGUC- -5'
14636 5' -61.4 NC_003521.1 + 118312 0.72 0.39559
Target:  5'- cGCCGGccugcccGCCGcCGCGUUGGCccUGCAGa -3'
miRNA:   3'- uCGGCCu------CGGCcGCGUAACCG--ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 118719 0.73 0.356749
Target:  5'- gGGCgaGGGGCgCGGCaccgGCAcgGGCUGCAGg -3'
miRNA:   3'- -UCGg-CCUCG-GCCG----CGUaaCCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 119593 0.67 0.709403
Target:  5'- cGCUGGgcGGCgGGUGCAgcgucucGuGCUGCAGg -3'
miRNA:   3'- uCGGCC--UCGgCCGCGUaa-----C-CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 119893 0.68 0.651712
Target:  5'- cGCCGGAGCCGcCGCcgcgGGCaGCc- -3'
miRNA:   3'- uCGGCCUCGGCcGCGuaa-CCGaCGuc -5'
14636 5' -61.4 NC_003521.1 + 119983 0.67 0.698937
Target:  5'- cGUCGacGAGCCgGGCGaCAUgcgccgcUGGCUGUAGu -3'
miRNA:   3'- uCGGC--CUCGG-CCGC-GUA-------ACCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 120598 0.68 0.642005
Target:  5'- cGCCGGcuccuGCCGGUaGCGUcugcguuuUGGCaGCGGg -3'
miRNA:   3'- uCGGCCu----CGGCCG-CGUA--------ACCGaCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.