miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14636 5' -61.4 NC_003521.1 + 39334 0.7 0.5268
Target:  5'- cGGCUaGGGUCaGCGUGUUGcGCUGCAGg -3'
miRNA:   3'- -UCGGcCUCGGcCGCGUAAC-CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 196066 0.7 0.536181
Target:  5'- aGGCCGGcgagguGGaCUGGCGCGagaGCUGCAGa -3'
miRNA:   3'- -UCGGCC------UC-GGCCGCGUaacCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 48716 0.7 0.545619
Target:  5'- aGGCCGGGagagguggagacGCCGGCGac---GCUGCAGc -3'
miRNA:   3'- -UCGGCCU------------CGGCCGCguaacCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 25625 0.69 0.551308
Target:  5'- gGGCUGGcgcuGCUGGCGCGUgaccacgacaucaGGCgGCAGa -3'
miRNA:   3'- -UCGGCCu---CGGCCGCGUAa------------CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 39013 0.69 0.555111
Target:  5'- aGGCCGGAGCgGGCGCcgccgaaGGaUUGCuGg -3'
miRNA:   3'- -UCGGCCUCGgCCGCGuaa----CC-GACGuC- -5'
14636 5' -61.4 NC_003521.1 + 13966 0.69 0.558921
Target:  5'- cGCUGGAGCCcugaugggccugcccGGCGCGgcGGCggGCGa -3'
miRNA:   3'- uCGGCCUCGG---------------CCGCGUaaCCGa-CGUc -5'
14636 5' -61.4 NC_003521.1 + 15871 0.69 0.56465
Target:  5'- gAGaCGGAGCUGGUGCucuguaugGGCgGCAGc -3'
miRNA:   3'- -UCgGCCUCGGCCGCGuaa-----CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 151527 0.69 0.583849
Target:  5'- cGGCCaGAGgCGGCGCGgacgcgGGUUGUAc -3'
miRNA:   3'- -UCGGcCUCgGCCGCGUaa----CCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 358 0.69 0.583849
Target:  5'- uGCCGGAGgCGGCGCcugcgaccGCUGCc- -3'
miRNA:   3'- uCGGCCUCgGCCGCGuaac----CGACGuc -5'
14636 5' -61.4 NC_003521.1 + 50958 0.69 0.583849
Target:  5'- aAGCCuu-GCCGGCGUAgUGGUaagucUGCAGg -3'
miRNA:   3'- -UCGGccuCGGCCGCGUaACCG-----ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 129065 0.69 0.593499
Target:  5'- cGCCcuuGAGCUGGCGCAgacccucGGCguacUGCAGg -3'
miRNA:   3'- uCGGc--CUCGGCCGCGUaa-----CCG----ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 135327 0.69 0.593499
Target:  5'- aGGCCGGGGUCGG-GCg--GGUUGCc- -3'
miRNA:   3'- -UCGGCCUCGGCCgCGuaaCCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 175790 0.69 0.597366
Target:  5'- uAGCCGGGGCUGcacgcgggccaggauGCGCGUgcuaggGGC-GCGGu -3'
miRNA:   3'- -UCGGCCUCGGC---------------CGCGUAa-----CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 152209 0.69 0.603174
Target:  5'- -cCCGGAcGaggucaCGGCGCAcgUGGCUGUGGg -3'
miRNA:   3'- ucGGCCU-Cg-----GCCGCGUa-ACCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 221906 0.68 0.610929
Target:  5'- uGCCGGcGCgCGGCGCcacccuucggGGCUGCc- -3'
miRNA:   3'- uCGGCCuCG-GCCGCGuaa-------CCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 113976 0.68 0.612869
Target:  5'- cGGCaGGcGGCCGGCcggGCAccGGCUGCAa -3'
miRNA:   3'- -UCGgCC-UCGGCCG---CGUaaCCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 195191 0.68 0.612869
Target:  5'- --gCGGAGCCGGCGgCggUGGCcgucUGCGu -3'
miRNA:   3'- ucgGCCUCGGCCGC-GuaACCG----ACGUc -5'
14636 5' -61.4 NC_003521.1 + 236253 0.68 0.622576
Target:  5'- -aCCGGAgGCCGGCGUGUgccccGGCcGUAGu -3'
miRNA:   3'- ucGGCCU-CGGCCGCGUAa----CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 46560 0.68 0.622576
Target:  5'- cGCCGGGuGCUGaaGCggUGGUUGCGGu -3'
miRNA:   3'- uCGGCCU-CGGCcgCGuaACCGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 239830 0.68 0.632291
Target:  5'- aAGCCGuacGGCCGGCcCAgcGGgaGCAGa -3'
miRNA:   3'- -UCGGCc--UCGGCCGcGUaaCCgaCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.