miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14636 5' -61.4 NC_003521.1 + 39549 0.67 0.690327
Target:  5'- aGGUCGGuggccccgacGCCGGC-CAUcUGGCUGCGc -3'
miRNA:   3'- -UCGGCCu---------CGGCCGcGUA-ACCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 87149 0.67 0.667211
Target:  5'- uGuuGGAGCgGGCGCAguucgugcgcgcGGCcgUGCAGc -3'
miRNA:   3'- uCggCCUCGgCCGCGUaa----------CCG--ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 143218 0.67 0.68072
Target:  5'- aGGCCGGAGCCGuCGCcgUGuCUucucgGCGGc -3'
miRNA:   3'- -UCGGCCUCGGCcGCGuaACcGA-----CGUC- -5'
14636 5' -61.4 NC_003521.1 + 148436 0.67 0.718856
Target:  5'- cGgaGGAGCCGGCGgAgcgacGGCaGCGGg -3'
miRNA:   3'- uCggCCUCGGCCGCgUaa---CCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 240636 0.67 0.690327
Target:  5'- gGGCCGGccGGUCGGaCGUGUUucgGGCcgGCGGg -3'
miRNA:   3'- -UCGGCC--UCGGCC-GCGUAA---CCGa-CGUC- -5'
14636 5' -61.4 NC_003521.1 + 180500 0.67 0.690327
Target:  5'- uGGCCGGcugcaucagcGCCGucuGCGCGUagGcGCUGCAGg -3'
miRNA:   3'- -UCGGCCu---------CGGC---CGCGUAa-C-CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 103115 0.67 0.718856
Target:  5'- cAGgCGaaGAGCUGGCGCAgcgcgcggcgGuGCUGCAGc -3'
miRNA:   3'- -UCgGC--CUCGGCCGCGUaa--------C-CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 169331 0.67 0.718856
Target:  5'- cGUCGcGGCCGGCGUGguuucgGGUUGCGc -3'
miRNA:   3'- uCGGCcUCGGCCGCGUaa----CCGACGUc -5'
14636 5' -61.4 NC_003521.1 + 98531 0.67 0.699891
Target:  5'- cGGCUGG-GCCGcUGCAgcGGCgGCGGg -3'
miRNA:   3'- -UCGGCCuCGGCcGCGUaaCCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 137522 0.67 0.709403
Target:  5'- uGCUGGAGuaCCGGCGCG-UGGUgGCc- -3'
miRNA:   3'- uCGGCCUC--GGCCGCGUaACCGaCGuc -5'
14636 5' -61.4 NC_003521.1 + 173533 0.67 0.709403
Target:  5'- cGUCGGGcGUCaGGCGCAgcGGCUGUc- -3'
miRNA:   3'- uCGGCCU-CGG-CCGCGUaaCCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 79621 0.67 0.679757
Target:  5'- uGCCGGGGCgaccgcggcgccuCGGCGUcgUcugcuGCUGCAGc -3'
miRNA:   3'- uCGGCCUCG-------------GCCGCGuaAc----CGACGUC- -5'
14636 5' -61.4 NC_003521.1 + 115376 0.67 0.671077
Target:  5'- uGGCCaGGGCCGGCauguGCAg-GGC-GCGGg -3'
miRNA:   3'- -UCGGcCUCGGCCG----CGUaaCCGaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 102591 0.67 0.670111
Target:  5'- -cUCGGGGCUGGCGC--UGGCcacgucgucgucgUGCAGc -3'
miRNA:   3'- ucGGCCUCGGCCGCGuaACCG-------------ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 19162 0.67 0.668178
Target:  5'- -aCCGaGAGCaCGGCGCuggUGGCcgacgugcacgagcUGCAGa -3'
miRNA:   3'- ucGGC-CUCG-GCCGCGua-ACCG--------------ACGUC- -5'
14636 5' -61.4 NC_003521.1 + 198377 0.67 0.718856
Target:  5'- cGCCGGA--CGGCGUugUGGCggGCGGc -3'
miRNA:   3'- uCGGCCUcgGCCGCGuaACCGa-CGUC- -5'
14636 5' -61.4 NC_003521.1 + 139174 0.67 0.68072
Target:  5'- gAGCCGGuGUC-GCGCAUguUGGuCUGCu- -3'
miRNA:   3'- -UCGGCCuCGGcCGCGUA--ACC-GACGuc -5'
14636 5' -61.4 NC_003521.1 + 239830 0.68 0.632291
Target:  5'- aAGCCGuacGGCCGGCcCAgcGGgaGCAGa -3'
miRNA:   3'- -UCGGCc--UCGGCCGcGUaaCCgaCGUC- -5'
14636 5' -61.4 NC_003521.1 + 188031 0.68 0.632291
Target:  5'- cGUCGGAcaucaGCCGGUGCAgcgGGUUGUc- -3'
miRNA:   3'- uCGGCCU-----CGGCCGCGUaa-CCGACGuc -5'
14636 5' -61.4 NC_003521.1 + 148939 0.68 0.632291
Target:  5'- cGCCGu-GCUGGCGCGUguGCUGCuGg -3'
miRNA:   3'- uCGGCcuCGGCCGCGUAacCGACGuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.