Results 41 - 60 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 138587 | 0.68 | 0.958597 |
Target: 5'- cGCGG-CaUCUCGC-CGGACACcauguacgaggugUGCCa -3' miRNA: 3'- cUGCCaGaAGAGCGcGCCUGUG-------------AUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 139449 | 0.66 | 0.986386 |
Target: 5'- aGCGGcgCgacggCUCGCGCacccgGGACuuucGCUGCCu -3' miRNA: 3'- cUGCCa-Gaa---GAGCGCG-----CCUG----UGAUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 145279 | 0.67 | 0.974121 |
Target: 5'- cGGCGGcCagCUCGCGCGccGGCGuCUcGCCg -3' miRNA: 3'- -CUGCCaGaaGAGCGCGC--CUGU-GA-UGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 149746 | 0.69 | 0.932373 |
Target: 5'- uGGCaGGUCUUCUgcggcgagggcggcCGCGCGGuACGCcucaacGCCa -3' miRNA: 3'- -CUG-CCAGAAGA--------------GCGCGCC-UGUGa-----UGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 150359 | 0.67 | 0.965614 |
Target: 5'- --aGGUCUg--CGUGCGGACcguggucgACUGCUa -3' miRNA: 3'- cugCCAGAagaGCGCGCCUG--------UGAUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 153241 | 0.67 | 0.968642 |
Target: 5'- uGAUGGaCUUCUUG-GCGu-CGCUACCg -3' miRNA: 3'- -CUGCCaGAAGAGCgCGCcuGUGAUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 154210 | 0.69 | 0.912642 |
Target: 5'- cGACaaGGUCaagucccUCUCGCGCGaGCGCUucGCCg -3' miRNA: 3'- -CUG--CCAGa------AGAGCGCGCcUGUGA--UGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 155935 | 0.69 | 0.912642 |
Target: 5'- uGACGGcCUaCUCGCGCcacccggaccGGGCGgccuuCUACCg -3' miRNA: 3'- -CUGCCaGAaGAGCGCG----------CCUGU-----GAUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 165873 | 0.68 | 0.949036 |
Target: 5'- aGCGGUgcaCgugCUCGgGCGGcggguacaccaccccGCGCUGCCg -3' miRNA: 3'- cUGCCA---Gaa-GAGCgCGCC---------------UGUGAUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 172053 | 0.67 | 0.973865 |
Target: 5'- -uCGGUggUCUCG-GCGGGCuccucgaACUGCCc -3' miRNA: 3'- cuGCCAgaAGAGCgCGCCUG-------UGAUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 172128 | 0.67 | 0.971476 |
Target: 5'- cACGGUCaugagUUCGuCGCGGcACAUgGCCg -3' miRNA: 3'- cUGCCAGaa---GAGC-GCGCC-UGUGaUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 177198 | 0.67 | 0.965614 |
Target: 5'- uGCGGUaCUUCUCcagGCGG-CGCUGCa -3' miRNA: 3'- cUGCCA-GAAGAGcg-CGCCuGUGAUGg -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 180066 | 0.71 | 0.852222 |
Target: 5'- cGGCGGggaUUCUCcCGCGGcgACUGCCg -3' miRNA: 3'- -CUGCCag-AAGAGcGCGCCugUGAUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 182159 | 0.68 | 0.951453 |
Target: 5'- aGGCGGUUaaaCUCGUGaCGGACG--GCCg -3' miRNA: 3'- -CUGCCAGaa-GAGCGC-GCCUGUgaUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 187599 | 0.69 | 0.933838 |
Target: 5'- cGGCGGUCgcUUCGCccGCGGACucccggcgaGCUcACCg -3' miRNA: 3'- -CUGCCAGaaGAGCG--CGCCUG---------UGA-UGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 187875 | 0.66 | 0.984736 |
Target: 5'- uGGCGGUCaccacCUCGgGCGG-CACggGCg -3' miRNA: 3'- -CUGCCAGaa---GAGCgCGCCuGUGa-UGg -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 197651 | 0.67 | 0.962385 |
Target: 5'- cGCGGUggcgCUCGUGCGGcagcaGCGCcACCa -3' miRNA: 3'- cUGCCAgaa-GAGCGCGCC-----UGUGaUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 201210 | 0.68 | 0.955309 |
Target: 5'- cGGCGGUCUgCUCcCGCuGGGC-CgGCCg -3' miRNA: 3'- -CUGCCAGAaGAGcGCG-CCUGuGaUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 210013 | 0.66 | 0.978868 |
Target: 5'- cGCGGg--UUUCGCcgGCGGGCccucggugcGCUACCg -3' miRNA: 3'- cUGCCagaAGAGCG--CGCCUG---------UGAUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 212502 | 0.7 | 0.894405 |
Target: 5'- cGGCGGUCcgcaggC-CGCGCcgGGGuCGCUGCCg -3' miRNA: 3'- -CUGCCAGaa----GaGCGCG--CCU-GUGAUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home