miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14637 3' -54.6 NC_003521.1 + 81760 0.77 0.534106
Target:  5'- uGugGGUCUUCUUGUG-GGAauucCACUGCCc -3'
miRNA:   3'- -CugCCAGAAGAGCGCgCCU----GUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 84701 0.73 0.757578
Target:  5'- cGACGGggUUUCUgaCGggcgagaaggagaCGCGGGCACUGCCg -3'
miRNA:   3'- -CUGCCa-GAAGA--GC-------------GCGCCUGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 88262 0.69 0.933838
Target:  5'- cACGGUgga---GCGCGuGACGCUGCCg -3'
miRNA:   3'- cUGCCAgaagagCGCGC-CUGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 91765 0.68 0.943089
Target:  5'- cGCGGcCgcgUCgaagcccaGCGCGGGCACgGCCu -3'
miRNA:   3'- cUGCCaGa--AGag------CGCGCCUGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 92253 0.68 0.954933
Target:  5'- cGCGGUCUUUuggccggUCGCGUcGACGCguucaaACCg -3'
miRNA:   3'- cUGCCAGAAG-------AGCGCGcCUGUGa-----UGG- -5'
14637 3' -54.6 NC_003521.1 + 95779 0.67 0.976583
Target:  5'- aGACGGUCaUCgugcCGCuCGGcCACgcgACCa -3'
miRNA:   3'- -CUGCCAGaAGa---GCGcGCCuGUGa--UGG- -5'
14637 3' -54.6 NC_003521.1 + 98661 0.66 0.986386
Target:  5'- cGACGG-CgagCUUGCGCGGAg---ACCu -3'
miRNA:   3'- -CUGCCaGaa-GAGCGCGCCUgugaUGG- -5'
14637 3' -54.6 NC_003521.1 + 102318 0.67 0.974121
Target:  5'- cGCGGcaUCgucgUCgugCGCGUGGGCGCcgacGCCg -3'
miRNA:   3'- cUGCC--AGa---AGa--GCGCGCCUGUGa---UGG- -5'
14637 3' -54.6 NC_003521.1 + 102799 0.66 0.984736
Target:  5'- cGGCGGcCgccagCUCGgGCGGcagcaaguagcgGCGCUGCg -3'
miRNA:   3'- -CUGCCaGaa---GAGCgCGCC------------UGUGAUGg -5'
14637 3' -54.6 NC_003521.1 + 103254 0.68 0.951453
Target:  5'- aACGGU----UCGCGCGuGCACUGCUg -3'
miRNA:   3'- cUGCCAgaagAGCGCGCcUGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 105928 0.68 0.955309
Target:  5'- aGACGGUCUg--CGUGUGGccgGCGCggaugaugACCg -3'
miRNA:   3'- -CUGCCAGAagaGCGCGCC---UGUGa-------UGG- -5'
14637 3' -54.6 NC_003521.1 + 107342 0.67 0.971201
Target:  5'- aGCGGcgccaggugauccUCgacCUCGgGCGGACAC-ACCu -3'
miRNA:   3'- cUGCC-------------AGaa-GAGCgCGCCUGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 110304 0.66 0.984736
Target:  5'- cACGGUCUgCUCGgGCaGcCGCaggGCCa -3'
miRNA:   3'- cUGCCAGAaGAGCgCGcCuGUGa--UGG- -5'
14637 3' -54.6 NC_003521.1 + 117729 0.66 0.984736
Target:  5'- gGACGGUCUggaggUGCGCGuGCcCUACg -3'
miRNA:   3'- -CUGCCAGAaga--GCGCGCcUGuGAUGg -5'
14637 3' -54.6 NC_003521.1 + 121209 0.67 0.971476
Target:  5'- cACGGUC---UCGCGCaGGGCGCgcagcuCCa -3'
miRNA:   3'- cUGCCAGaagAGCGCG-CCUGUGau----GG- -5'
14637 3' -54.6 NC_003521.1 + 131076 0.68 0.955309
Target:  5'- uGGCGGcgaccgCggCUCGCGCGGGCu---CCg -3'
miRNA:   3'- -CUGCCa-----GaaGAGCGCGCCUGugauGG- -5'
14637 3' -54.6 NC_003521.1 + 131805 0.69 0.912642
Target:  5'- -gUGGUaccCUCGcCGCGGACccACUACCu -3'
miRNA:   3'- cuGCCAgaaGAGC-GCGCCUG--UGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 133968 0.7 0.881165
Target:  5'- uACGGgcgUCcaUGCGCGGACGCUgGCCg -3'
miRNA:   3'- cUGCCagaAGa-GCGCGCCUGUGA-UGG- -5'
14637 3' -54.6 NC_003521.1 + 135374 0.68 0.947381
Target:  5'- cGGCGGUUa--UCGCccGCGGGCGCcaaACCg -3'
miRNA:   3'- -CUGCCAGaagAGCG--CGCCUGUGa--UGG- -5'
14637 3' -54.6 NC_003521.1 + 137025 0.69 0.928876
Target:  5'- cACGGUCaUCUCGC-CGGAgCACgGCg -3'
miRNA:   3'- cUGCCAGaAGAGCGcGCCU-GUGaUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.