Results 21 - 40 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 154210 | 0.69 | 0.912642 |
Target: 5'- cGACaaGGUCaagucccUCUCGCGCGaGCGCUucGCCg -3' miRNA: 3'- -CUG--CCAGa------AGAGCGCGCcUGUGA--UGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 153241 | 0.67 | 0.968642 |
Target: 5'- uGAUGGaCUUCUUG-GCGu-CGCUACCg -3' miRNA: 3'- -CUGCCaGAAGAGCgCGCcuGUGAUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 150359 | 0.67 | 0.965614 |
Target: 5'- --aGGUCUg--CGUGCGGACcguggucgACUGCUa -3' miRNA: 3'- cugCCAGAagaGCGCGCCUG--------UGAUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 149746 | 0.69 | 0.932373 |
Target: 5'- uGGCaGGUCUUCUgcggcgagggcggcCGCGCGGuACGCcucaacGCCa -3' miRNA: 3'- -CUG-CCAGAAGA--------------GCGCGCC-UGUGa-----UGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 145279 | 0.67 | 0.974121 |
Target: 5'- cGGCGGcCagCUCGCGCGccGGCGuCUcGCCg -3' miRNA: 3'- -CUGCCaGaaGAGCGCGC--CUGU-GA-UGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 139449 | 0.66 | 0.986386 |
Target: 5'- aGCGGcgCgacggCUCGCGCacccgGGACuuucGCUGCCu -3' miRNA: 3'- cUGCCa-Gaa---GAGCGCG-----CCUG----UGAUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 138587 | 0.68 | 0.958597 |
Target: 5'- cGCGG-CaUCUCGC-CGGACACcauguacgaggugUGCCa -3' miRNA: 3'- cUGCCaGaAGAGCGcGCCUGUG-------------AUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 137025 | 0.69 | 0.928876 |
Target: 5'- cACGGUCaUCUCGC-CGGAgCACgGCg -3' miRNA: 3'- cUGCCAGaAGAGCGcGCCU-GUGaUGg -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 135374 | 0.68 | 0.947381 |
Target: 5'- cGGCGGUUa--UCGCccGCGGGCGCcaaACCg -3' miRNA: 3'- -CUGCCAGaagAGCG--CGCCUGUGa--UGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 133968 | 0.7 | 0.881165 |
Target: 5'- uACGGgcgUCcaUGCGCGGACGCUgGCCg -3' miRNA: 3'- cUGCCagaAGa-GCGCGCCUGUGA-UGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 131805 | 0.69 | 0.912642 |
Target: 5'- -gUGGUaccCUCGcCGCGGACccACUACCu -3' miRNA: 3'- cuGCCAgaaGAGC-GCGCCUG--UGAUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 131076 | 0.68 | 0.955309 |
Target: 5'- uGGCGGcgaccgCggCUCGCGCGGGCu---CCg -3' miRNA: 3'- -CUGCCa-----GaaGAGCGCGCCUGugauGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 121209 | 0.67 | 0.971476 |
Target: 5'- cACGGUC---UCGCGCaGGGCGCgcagcuCCa -3' miRNA: 3'- cUGCCAGaagAGCGCG-CCUGUGau----GG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 117729 | 0.66 | 0.984736 |
Target: 5'- gGACGGUCUggaggUGCGCGuGCcCUACg -3' miRNA: 3'- -CUGCCAGAaga--GCGCGCcUGuGAUGg -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 110304 | 0.66 | 0.984736 |
Target: 5'- cACGGUCUgCUCGgGCaGcCGCaggGCCa -3' miRNA: 3'- cUGCCAGAaGAGCgCGcCuGUGa--UGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 107342 | 0.67 | 0.971201 |
Target: 5'- aGCGGcgccaggugauccUCgacCUCGgGCGGACAC-ACCu -3' miRNA: 3'- cUGCC-------------AGaa-GAGCgCGCCUGUGaUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 105928 | 0.68 | 0.955309 |
Target: 5'- aGACGGUCUg--CGUGUGGccgGCGCggaugaugACCg -3' miRNA: 3'- -CUGCCAGAagaGCGCGCC---UGUGa-------UGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 103254 | 0.68 | 0.951453 |
Target: 5'- aACGGU----UCGCGCGuGCACUGCUg -3' miRNA: 3'- cUGCCAgaagAGCGCGCcUGUGAUGG- -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 102799 | 0.66 | 0.984736 |
Target: 5'- cGGCGGcCgccagCUCGgGCGGcagcaaguagcgGCGCUGCg -3' miRNA: 3'- -CUGCCaGaa---GAGCgCGCC------------UGUGAUGg -5' |
|||||||
14637 | 3' | -54.6 | NC_003521.1 | + | 102318 | 0.67 | 0.974121 |
Target: 5'- cGCGGcaUCgucgUCgugCGCGUGGGCGCcgacGCCg -3' miRNA: 3'- cUGCC--AGa---AGa--GCGCGCCUGUGa---UGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home