miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14637 3' -54.6 NC_003521.1 + 235087 1.12 0.004398
Target:  5'- gGACGGUCUUCUCGCGCGGACACUACCa -3'
miRNA:   3'- -CUGCCAGAAGAGCGCGCCUGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 235006 0.66 0.982938
Target:  5'- aGCGGUCccccuggcCUC-CGCGGACGCggguuuacggACCg -3'
miRNA:   3'- cUGCCAGaa------GAGcGCGCCUGUGa---------UGG- -5'
14637 3' -54.6 NC_003521.1 + 232905 0.74 0.71106
Target:  5'- cGCGGUCUg--UGCGUGGAC-CUGCUg -3'
miRNA:   3'- cUGCCAGAagaGCGCGCCUGuGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 231912 0.66 0.986386
Target:  5'- aGCGGcUCUUCUCcCGCGccguagccaGCUACCa -3'
miRNA:   3'- cUGCC-AGAAGAGcGCGCcug------UGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 221829 0.67 0.965614
Target:  5'- gGGCGuGUCUcccUCgUCGCGCGG-CGCguccucgACCc -3'
miRNA:   3'- -CUGC-CAGA---AG-AGCGCGCCuGUGa------UGG- -5'
14637 3' -54.6 NC_003521.1 + 218023 0.73 0.749193
Target:  5'- uGCGGUCacUUCaCGCGCGGAUAgCUACg -3'
miRNA:   3'- cUGCCAG--AAGaGCGCGCCUGU-GAUGg -5'
14637 3' -54.6 NC_003521.1 + 217101 0.66 0.984563
Target:  5'- -uCGGuguacUCUUUUagcaucuggaagcCGCGCGGACAC-ACCa -3'
miRNA:   3'- cuGCC-----AGAAGA-------------GCGCGCCUGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 212502 0.7 0.894405
Target:  5'- cGGCGGUCcgcaggC-CGCGCcgGGGuCGCUGCCg -3'
miRNA:   3'- -CUGCCAGaa----GaGCGCG--CCU-GUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 210013 0.66 0.978868
Target:  5'- cGCGGg--UUUCGCcgGCGGGCccucggugcGCUACCg -3'
miRNA:   3'- cUGCCagaAGAGCG--CGCCUG---------UGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 201210 0.68 0.955309
Target:  5'- cGGCGGUCUgCUCcCGCuGGGC-CgGCCg -3'
miRNA:   3'- -CUGCCAGAaGAGcGCG-CCUGuGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 197651 0.67 0.962385
Target:  5'- cGCGGUggcgCUCGUGCGGcagcaGCGCcACCa -3'
miRNA:   3'- cUGCCAgaa-GAGCGCGCC-----UGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 187875 0.66 0.984736
Target:  5'- uGGCGGUCaccacCUCGgGCGG-CACggGCg -3'
miRNA:   3'- -CUGCCAGaa---GAGCgCGCCuGUGa-UGg -5'
14637 3' -54.6 NC_003521.1 + 187599 0.69 0.933838
Target:  5'- cGGCGGUCgcUUCGCccGCGGACucccggcgaGCUcACCg -3'
miRNA:   3'- -CUGCCAGaaGAGCG--CGCCUG---------UGA-UGG- -5'
14637 3' -54.6 NC_003521.1 + 182159 0.68 0.951453
Target:  5'- aGGCGGUUaaaCUCGUGaCGGACG--GCCg -3'
miRNA:   3'- -CUGCCAGaa-GAGCGC-GCCUGUgaUGG- -5'
14637 3' -54.6 NC_003521.1 + 180066 0.71 0.852222
Target:  5'- cGGCGGggaUUCUCcCGCGGcgACUGCCg -3'
miRNA:   3'- -CUGCCag-AAGAGcGCGCCugUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 177198 0.67 0.965614
Target:  5'- uGCGGUaCUUCUCcagGCGG-CGCUGCa -3'
miRNA:   3'- cUGCCA-GAAGAGcg-CGCCuGUGAUGg -5'
14637 3' -54.6 NC_003521.1 + 172128 0.67 0.971476
Target:  5'- cACGGUCaugagUUCGuCGCGGcACAUgGCCg -3'
miRNA:   3'- cUGCCAGaa---GAGC-GCGCC-UGUGaUGG- -5'
14637 3' -54.6 NC_003521.1 + 172053 0.67 0.973865
Target:  5'- -uCGGUggUCUCG-GCGGGCuccucgaACUGCCc -3'
miRNA:   3'- cuGCCAgaAGAGCgCGCCUG-------UGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 165873 0.68 0.949036
Target:  5'- aGCGGUgcaCgugCUCGgGCGGcggguacaccaccccGCGCUGCCg -3'
miRNA:   3'- cUGCCA---Gaa-GAGCgCGCC---------------UGUGAUGG- -5'
14637 3' -54.6 NC_003521.1 + 155935 0.69 0.912642
Target:  5'- uGACGGcCUaCUCGCGCcacccggaccGGGCGgccuuCUACCg -3'
miRNA:   3'- -CUGCCaGAaGAGCGCG----------CCUGU-----GAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.