miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14637 5' -58.4 NC_003521.1 + 56806 0.72 0.566793
Target:  5'- -cGACGGCaCCUCGGGGUGG-GAaCGUc -3'
miRNA:   3'- auCUGUCG-GGGGCCCUACCaCUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 44836 0.67 0.86693
Target:  5'- --cACAGCUCCUGGGGcUGGUGAc--- -3'
miRNA:   3'- aucUGUCGGGGGCCCU-ACCACUagcg -5'
14637 5' -58.4 NC_003521.1 + 44285 0.69 0.768816
Target:  5'- -cGGCuuucuCCCCCGGGAgcUGGgcgGGUUGCu -3'
miRNA:   3'- auCUGuc---GGGGGCCCU--ACCa--CUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 40970 0.69 0.768816
Target:  5'- aGGACGGgCCCCGGGGg---GA-CGCg -3'
miRNA:   3'- aUCUGUCgGGGGCCCUaccaCUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 38230 0.67 0.828833
Target:  5'- aGGGCGGCCUCggCGGGcgGGgcgGAgaCGCg -3'
miRNA:   3'- aUCUGUCGGGG--GCCCuaCCa--CUa-GCG- -5'
14637 5' -58.4 NC_003521.1 + 37619 0.66 0.900198
Target:  5'- gGGAUuaccugguGGCCUCCGGcGGugaacaucUGGUGGUgGCa -3'
miRNA:   3'- aUCUG--------UCGGGGGCC-CU--------ACCACUAgCG- -5'
14637 5' -58.4 NC_003521.1 + 37518 0.7 0.72244
Target:  5'- cGGACAucagcgacGUCCUgGGGGUGGgcagcgggGGUCGCg -3'
miRNA:   3'- aUCUGU--------CGGGGgCCCUACCa-------CUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 37220 0.72 0.576478
Target:  5'- uUAGGCGGCCUCgGGGGUGGaGAcCGg -3'
miRNA:   3'- -AUCUGUCGGGGgCCCUACCaCUaGCg -5'
14637 5' -58.4 NC_003521.1 + 25569 0.66 0.908575
Target:  5'- cAGGCGGCCgCgGGGAcaGGUGGgcuuguucauccugCGCa -3'
miRNA:   3'- aUCUGUCGGgGgCCCUa-CCACUa-------------GCG- -5'
14637 5' -58.4 NC_003521.1 + 20908 0.66 0.893958
Target:  5'- aGGAgcaGGUCCCCGGGGaccGGUcucaAUCGCa -3'
miRNA:   3'- aUCUg--UCGGGGGCCCUa--CCAc---UAGCG- -5'
14637 5' -58.4 NC_003521.1 + 18909 0.66 0.906224
Target:  5'- -cGGCAGCCCCgaaGGGUGGcGccgCGCg -3'
miRNA:   3'- auCUGUCGGGGgc-CCUACCaCua-GCG- -5'
14637 5' -58.4 NC_003521.1 + 649 0.69 0.768816
Target:  5'- aGGACGGgCCCCGGGGg---GA-CGCg -3'
miRNA:   3'- aUCUGUCgGGGGCCCUaccaCUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.