miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14637 5' -58.4 NC_003521.1 + 148441 0.67 0.859677
Target:  5'- -cGGCGGCUCCaGGGGUggccGGUGcgUGCu -3'
miRNA:   3'- auCUGUCGGGGgCCCUA----CCACuaGCG- -5'
14637 5' -58.4 NC_003521.1 + 143333 0.66 0.893958
Target:  5'- gAGACAGCCgCCaccGAUGGcGGcUCGCg -3'
miRNA:   3'- aUCUGUCGGgGGcc-CUACCaCU-AGCG- -5'
14637 5' -58.4 NC_003521.1 + 129143 0.69 0.731891
Target:  5'- cAGGCGGCgCUCagcucgaagGGGAUGGUGAugggcgacuucUCGCu -3'
miRNA:   3'- aUCUGUCGgGGG---------CCCUACCACU-----------AGCG- -5'
14637 5' -58.4 NC_003521.1 + 120885 0.7 0.674281
Target:  5'- cGGACuGCCCCUGGaGcgGGUGcccGUCaGCg -3'
miRNA:   3'- aUCUGuCGGGGGCC-CuaCCAC---UAG-CG- -5'
14637 5' -58.4 NC_003521.1 + 119105 0.67 0.86693
Target:  5'- -cGGCAGCUCgCCGGGcgacUGG-GGUCGg -3'
miRNA:   3'- auCUGUCGGG-GGCCCu---ACCaCUAGCg -5'
14637 5' -58.4 NC_003521.1 + 112443 0.7 0.703334
Target:  5'- cAGGCGGCCCaggCGGcccUGGUGggCGCg -3'
miRNA:   3'- aUCUGUCGGGg--GCCcu-ACCACuaGCG- -5'
14637 5' -58.4 NC_003521.1 + 108913 0.67 0.828833
Target:  5'- -cGACAGCUCCUucagcaGGAUGGccuccaGAUCGCu -3'
miRNA:   3'- auCUGUCGGGGGc-----CCUACCa-----CUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 108277 0.66 0.88085
Target:  5'- aAGACGGCggcaCCGaGGgcGGUGGUgGCg -3'
miRNA:   3'- aUCUGUCGgg--GGC-CCuaCCACUAgCG- -5'
14637 5' -58.4 NC_003521.1 + 105134 0.7 0.690793
Target:  5'- gAGGCAGaCCCCCGaGGucccccaggacgagGUGGUGAcgaCGCc -3'
miRNA:   3'- aUCUGUC-GGGGGC-CC--------------UACCACUa--GCG- -5'
14637 5' -58.4 NC_003521.1 + 103971 0.68 0.820694
Target:  5'- gGGACAGCgcaggCCCaGGGUGGUGAagacggCGUa -3'
miRNA:   3'- aUCUGUCGg----GGGcCCUACCACUa-----GCG- -5'
14637 5' -58.4 NC_003521.1 + 90633 0.66 0.88085
Target:  5'- cAGAaGGCCCgCCGGGAgcGGUag-CGCa -3'
miRNA:   3'- aUCUgUCGGG-GGCCCUa-CCAcuaGCG- -5'
14637 5' -58.4 NC_003521.1 + 84872 0.66 0.893958
Target:  5'- gUAGAaGGCCgCCCGGuccgGGUGG-CGCg -3'
miRNA:   3'- -AUCUgUCGG-GGGCCcua-CCACUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 84569 0.66 0.88085
Target:  5'- --aGCGGCCCUgguuCGGGAUGaUGGUCaGCu -3'
miRNA:   3'- aucUGUCGGGG----GCCCUACcACUAG-CG- -5'
14637 5' -58.4 NC_003521.1 + 77698 0.7 0.712919
Target:  5'- cAGACAGaUgCCCGaGGAggcggcGGUGGUCGUg -3'
miRNA:   3'- aUCUGUC-GgGGGC-CCUa-----CCACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 74920 0.67 0.86693
Target:  5'- gAGuCGGCCCggcagcgCGGGGUGGUGuaccCGCc -3'
miRNA:   3'- aUCuGUCGGGg------GCCCUACCACua--GCG- -5'
14637 5' -58.4 NC_003521.1 + 71417 0.69 0.781343
Target:  5'- -cGGCGGCCCCgaaccugacagaggaCGaGGcgGG-GAUCGCg -3'
miRNA:   3'- auCUGUCGGGG---------------GC-CCuaCCaCUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 69045 0.73 0.500471
Target:  5'- gAGcAUGGCCCCCaccaccGGAUGGUGAUUGUu -3'
miRNA:   3'- aUC-UGUCGGGGGc-----CCUACCACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 67415 0.66 0.893958
Target:  5'- --aGCAGCgCCCCcuccacGGGUGGUGuUUGCg -3'
miRNA:   3'- aucUGUCG-GGGGc-----CCUACCACuAGCG- -5'
14637 5' -58.4 NC_003521.1 + 61611 0.67 0.844609
Target:  5'- gGGcGCAGCgCUCCaacGGAcgGGUGAUCGCc -3'
miRNA:   3'- aUC-UGUCG-GGGGc--CCUa-CCACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 60097 0.67 0.844609
Target:  5'- --aACGGCUcuucuuccaCCCGGGGcUGGUGA-CGCg -3'
miRNA:   3'- aucUGUCGG---------GGGCCCU-ACCACUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.