miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14637 5' -58.4 NC_003521.1 + 238458 0.67 0.828833
Target:  5'- aGGGCGGCCUCggCGGGcgGGgcgGAgaCGCg -3'
miRNA:   3'- aUCUGUCGGGG--GCCCuaCCa--CUa-GCG- -5'
14637 5' -58.4 NC_003521.1 + 236279 0.67 0.852235
Target:  5'- gUAGugAcUCCCCGGGGacccUGcgcGUGAUCGCc -3'
miRNA:   3'- -AUCugUcGGGGGCCCU----AC---CACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 235125 1.09 0.002851
Target:  5'- aUAGACAGCCCCCGGGAUGGUGAUCGCc -3'
miRNA:   3'- -AUCUGUCGGGGGCCCUACCACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 232206 0.78 0.274064
Target:  5'- ----gGGCCCCCGcGGGUGGUGGUgGCu -3'
miRNA:   3'- aucugUCGGGGGC-CCUACCACUAgCG- -5'
14637 5' -58.4 NC_003521.1 + 226293 0.69 0.759732
Target:  5'- -uGGCguacgAGCCCUCGGGcGUGGUG-UCGUu -3'
miRNA:   3'- auCUG-----UCGGGGGCCC-UACCACuAGCG- -5'
14637 5' -58.4 NC_003521.1 + 224317 0.69 0.731891
Target:  5'- cAGAC-GCCCCCGucAcGGUGAcUCGCg -3'
miRNA:   3'- aUCUGuCGGGGGCccUaCCACU-AGCG- -5'
14637 5' -58.4 NC_003521.1 + 217364 0.68 0.820694
Target:  5'- gUAG-UAGUCCCCGuaccaGAUGGcGGUCGCg -3'
miRNA:   3'- -AUCuGUCGGGGGCc----CUACCaCUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 217017 0.66 0.906224
Target:  5'- cUGGuCAGgguuuUCCCCGGGAUGGaGAU-GCu -3'
miRNA:   3'- -AUCuGUC-----GGGGGCCCUACCaCUAgCG- -5'
14637 5' -58.4 NC_003521.1 + 215040 0.66 0.893322
Target:  5'- gUGGGCugcagccgcguggAGCCCCUGGGcugccUGGUGGU-GCc -3'
miRNA:   3'- -AUCUG-------------UCGGGGGCCCu----ACCACUAgCG- -5'
14637 5' -58.4 NC_003521.1 + 213605 0.67 0.859677
Target:  5'- -uGACcaGGCUgUUGGGGUGGcGGUCGCc -3'
miRNA:   3'- auCUG--UCGGgGGCCCUACCaCUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 211330 0.67 0.86693
Target:  5'- cAGGCGGUCCCgCGGGcgcgaGUGGUuGGgguccCGCa -3'
miRNA:   3'- aUCUGUCGGGG-GCCC-----UACCA-CUa----GCG- -5'
14637 5' -58.4 NC_003521.1 + 207218 0.67 0.859677
Target:  5'- -cGACAGCaacuauUUCGGGGUGGUGcgCGa -3'
miRNA:   3'- auCUGUCGg-----GGGCCCUACCACuaGCg -5'
14637 5' -58.4 NC_003521.1 + 193316 0.66 0.893958
Target:  5'- gUGGugGGCa--CGGuGggGGUGGUCGCc -3'
miRNA:   3'- -AUCugUCGgggGCC-CuaCCACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 188740 0.69 0.768816
Target:  5'- gAGcGCGGCCCUC---AUGGUGGUCGCu -3'
miRNA:   3'- aUC-UGUCGGGGGcccUACCACUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 187808 0.66 0.887508
Target:  5'- -cGGCGGCgaCCUGGGuugggaguuuGUGGUGG-CGCg -3'
miRNA:   3'- auCUGUCGg-GGGCCC----------UACCACUaGCG- -5'
14637 5' -58.4 NC_003521.1 + 186501 0.68 0.819872
Target:  5'- -cGAgAGCCCCguCGGGAUcucgggcGGUG-UCGCc -3'
miRNA:   3'- auCUgUCGGGG--GCCCUA-------CCACuAGCG- -5'
14637 5' -58.4 NC_003521.1 + 178805 0.67 0.828833
Target:  5'- gAGGCAuGCCCggCGGGcgGGUcGAUCGa -3'
miRNA:   3'- aUCUGU-CGGGg-GCCCuaCCA-CUAGCg -5'
14637 5' -58.4 NC_003521.1 + 178798 0.72 0.605725
Target:  5'- aGGACgGGCCCCCGGGcaccucGUGGUaucUCGUg -3'
miRNA:   3'- aUCUG-UCGGGGGCCC------UACCAcu-AGCG- -5'
14637 5' -58.4 NC_003521.1 + 172552 0.66 0.88085
Target:  5'- gGGAUcucguGCCgcuguCCCGGGGUcGGcGGUCGCa -3'
miRNA:   3'- aUCUGu----CGG-----GGGCCCUA-CCaCUAGCG- -5'
14637 5' -58.4 NC_003521.1 + 152505 0.68 0.803953
Target:  5'- cAGAUAgGCCUCgGGGAUGG-GGUCcaggGCg -3'
miRNA:   3'- aUCUGU-CGGGGgCCCUACCaCUAG----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.