Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14637 | 5' | -58.4 | NC_003521.1 | + | 84872 | 0.66 | 0.893958 |
Target: 5'- gUAGAaGGCCgCCCGGuccgGGUGG-CGCg -3' miRNA: 3'- -AUCUgUCGG-GGGCCcua-CCACUaGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 90633 | 0.66 | 0.88085 |
Target: 5'- cAGAaGGCCCgCCGGGAgcGGUag-CGCa -3' miRNA: 3'- aUCUgUCGGG-GGCCCUa-CCAcuaGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 103971 | 0.68 | 0.820694 |
Target: 5'- gGGACAGCgcaggCCCaGGGUGGUGAagacggCGUa -3' miRNA: 3'- aUCUGUCGg----GGGcCCUACCACUa-----GCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 105134 | 0.7 | 0.690793 |
Target: 5'- gAGGCAGaCCCCCGaGGucccccaggacgagGUGGUGAcgaCGCc -3' miRNA: 3'- aUCUGUC-GGGGGC-CC--------------UACCACUa--GCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 108277 | 0.66 | 0.88085 |
Target: 5'- aAGACGGCggcaCCGaGGgcGGUGGUgGCg -3' miRNA: 3'- aUCUGUCGgg--GGC-CCuaCCACUAgCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 108913 | 0.67 | 0.828833 |
Target: 5'- -cGACAGCUCCUucagcaGGAUGGccuccaGAUCGCu -3' miRNA: 3'- auCUGUCGGGGGc-----CCUACCa-----CUAGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 112443 | 0.7 | 0.703334 |
Target: 5'- cAGGCGGCCCaggCGGcccUGGUGggCGCg -3' miRNA: 3'- aUCUGUCGGGg--GCCcu-ACCACuaGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 119105 | 0.67 | 0.86693 |
Target: 5'- -cGGCAGCUCgCCGGGcgacUGG-GGUCGg -3' miRNA: 3'- auCUGUCGGG-GGCCCu---ACCaCUAGCg -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 120885 | 0.7 | 0.674281 |
Target: 5'- cGGACuGCCCCUGGaGcgGGUGcccGUCaGCg -3' miRNA: 3'- aUCUGuCGGGGGCC-CuaCCAC---UAG-CG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 129143 | 0.69 | 0.731891 |
Target: 5'- cAGGCGGCgCUCagcucgaagGGGAUGGUGAugggcgacuucUCGCu -3' miRNA: 3'- aUCUGUCGgGGG---------CCCUACCACU-----------AGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 143333 | 0.66 | 0.893958 |
Target: 5'- gAGACAGCCgCCaccGAUGGcGGcUCGCg -3' miRNA: 3'- aUCUGUCGGgGGcc-CUACCaCU-AGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 148441 | 0.67 | 0.859677 |
Target: 5'- -cGGCGGCUCCaGGGGUggccGGUGcgUGCu -3' miRNA: 3'- auCUGUCGGGGgCCCUA----CCACuaGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 152505 | 0.68 | 0.803953 |
Target: 5'- cAGAUAgGCCUCgGGGAUGG-GGUCcaggGCg -3' miRNA: 3'- aUCUGU-CGGGGgCCCUACCaCUAG----CG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 172552 | 0.66 | 0.88085 |
Target: 5'- gGGAUcucguGCCgcuguCCCGGGGUcGGcGGUCGCa -3' miRNA: 3'- aUCUGu----CGG-----GGGCCCUA-CCaCUAGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 178798 | 0.72 | 0.605725 |
Target: 5'- aGGACgGGCCCCCGGGcaccucGUGGUaucUCGUg -3' miRNA: 3'- aUCUG-UCGGGGGCCC------UACCAcu-AGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 178805 | 0.67 | 0.828833 |
Target: 5'- gAGGCAuGCCCggCGGGcgGGUcGAUCGa -3' miRNA: 3'- aUCUGU-CGGGg-GCCCuaCCA-CUAGCg -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 186501 | 0.68 | 0.819872 |
Target: 5'- -cGAgAGCCCCguCGGGAUcucgggcGGUG-UCGCc -3' miRNA: 3'- auCUgUCGGGG--GCCCUA-------CCACuAGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 187808 | 0.66 | 0.887508 |
Target: 5'- -cGGCGGCgaCCUGGGuugggaguuuGUGGUGG-CGCg -3' miRNA: 3'- auCUGUCGg-GGGCCC----------UACCACUaGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 188740 | 0.69 | 0.768816 |
Target: 5'- gAGcGCGGCCCUC---AUGGUGGUCGCu -3' miRNA: 3'- aUC-UGUCGGGGGcccUACCACUAGCG- -5' |
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14637 | 5' | -58.4 | NC_003521.1 | + | 193316 | 0.66 | 0.893958 |
Target: 5'- gUGGugGGCa--CGGuGggGGUGGUCGCc -3' miRNA: 3'- -AUCugUCGgggGCC-CuaCCACUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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