Results 61 - 80 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14639 | 5' | -62.4 | NC_003521.1 | + | 12120 | 0.7 | 0.507462 |
Target: 5'- gCCgCCGCCgCGcUCCuUCGGGUGcGGCg -3' miRNA: 3'- aGGaGGCGGaGC-AGG-AGCCCGCuCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 154373 | 0.7 | 0.524562 |
Target: 5'- aCCUCUGUCgCGUCCUCGGucgccGCugccgccaaucagGAGGCg -3' miRNA: 3'- aGGAGGCGGaGCAGGAGCC-----CG-------------CUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 226284 | 0.7 | 0.54371 |
Target: 5'- -gCUCgGCCguggCGUacgagcCCUCGGGCGuGGUg -3' miRNA: 3'- agGAGgCGGa---GCA------GGAGCCCGCuCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 106384 | 0.7 | 0.54371 |
Target: 5'- cUCCgCCGCCUccucCGUCgUCGGGUggcgugaaGAGGUu -3' miRNA: 3'- -AGGaGGCGGA----GCAGgAGCCCG--------CUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 187856 | 0.7 | 0.55291 |
Target: 5'- uUCCUcaCCGCCUguugcauggCGgucaccaCCUCGGGCGgcacGGGCg -3' miRNA: 3'- -AGGA--GGCGGA---------GCa------GGAGCCCGC----UCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 214780 | 0.7 | 0.562156 |
Target: 5'- cCCUCCcgcucGCCgcCGUCCucuucaccgccgUCGGGCGccGGGCg -3' miRNA: 3'- aGGAGG-----CGGa-GCAGG------------AGCCCGC--UCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 37307 | 0.72 | 0.446717 |
Target: 5'- gCCUCCGUCUgcaCGucUCCUCuGGGUGGGGg -3' miRNA: 3'- aGGAGGCGGA---GC--AGGAG-CCCGCUCCg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 39823 | 0.72 | 0.446717 |
Target: 5'- gUCCUCCGCCgauggCGccugcuuggCCUcCGGcGUGGGGCu -3' miRNA: 3'- -AGGAGGCGGa----GCa--------GGA-GCC-CGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 64898 | 0.71 | 0.489723 |
Target: 5'- gUCCUCCuCCggcUCCUCGGGCcAGGUc -3' miRNA: 3'- -AGGAGGcGGagcAGGAGCCCGcUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 167150 | 0.7 | 0.507462 |
Target: 5'- -gCagCGCCUUGggcgCCUCGGGCgucuugGAGGCg -3' miRNA: 3'- agGagGCGGAGCa---GGAGCCCG------CUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 97462 | 0.7 | 0.516433 |
Target: 5'- cCUUCUGgcagaaguCCUCGUCCUUGGGCacguagaccagGAGGUa -3' miRNA: 3'- aGGAGGC--------GGAGCAGGAGCCCG-----------CUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 84738 | 0.7 | 0.525468 |
Target: 5'- aCUgCCGUCgUCGUCuugCUCGGGCGcGGCg -3' miRNA: 3'- aGGaGGCGG-AGCAG---GAGCCCGCuCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 207381 | 0.72 | 0.421946 |
Target: 5'- gCCUUCGCCUa--CCUgcCGGGCGAGGa -3' miRNA: 3'- aGGAGGCGGAgcaGGA--GCCCGCUCCg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 211441 | 0.73 | 0.390239 |
Target: 5'- gUCgUCCuCCUCGgCCUCGcGGuCGGGGCa -3' miRNA: 3'- -AGgAGGcGGAGCaGGAGC-CC-GCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 236532 | 0.73 | 0.360131 |
Target: 5'- cCCUCUGCCUUGUCgUCGuucGGCGucGCu -3' miRNA: 3'- aGGAGGCGGAGCAGgAGC---CCGCucCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 127273 | 0.74 | 0.352862 |
Target: 5'- cUCCUCgCGCUgguggUCGUCC-CGGcGCGAGGg -3' miRNA: 3'- -AGGAG-GCGG-----AGCAGGaGCC-CGCUCCg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 48399 | 0.74 | 0.324833 |
Target: 5'- cUCCUUCGUCUC--CCUCGagucucGGCGAGGCg -3' miRNA: 3'- -AGGAGGCGGAGcaGGAGC------CCGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 169395 | 0.77 | 0.234662 |
Target: 5'- aUCC-CCGCCUCGUCCUCugucaGGUucGGGGCc -3' miRNA: 3'- -AGGaGGCGGAGCAGGAGc----CCG--CUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 87779 | 0.78 | 0.204927 |
Target: 5'- gCCUgggggCCGCCUCGUCgguCUCGGGCGgccuGGGCc -3' miRNA: 3'- aGGA-----GGCGGAGCAG---GAGCCCGC----UCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 196448 | 0.66 | 0.7914 |
Target: 5'- ----aCGCacCUCGgCCUCGGGCGuGGGCc -3' miRNA: 3'- aggagGCG--GAGCaGGAGCCCGC-UCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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