miRNA display CGI


Results 41 - 60 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14639 5' -62.4 NC_003521.1 + 193546 0.77 0.224367
Target:  5'- aCCUUCGCCggGaUCCUCGGGCGGuuuGGCc -3'
miRNA:   3'- aGGAGGCGGagC-AGGAGCCCGCU---CCG- -5'
14639 5' -62.4 NC_003521.1 + 153070 0.77 0.224367
Target:  5'- cUCCUCCGCCgcCGgggCC-CGGGCcGGGGCc -3'
miRNA:   3'- -AGGAGGCGGa-GCa--GGaGCCCG-CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 234812 0.8 0.151552
Target:  5'- cUCCUCgGCCUCGUCgUCGGGguuCGuGGCc -3'
miRNA:   3'- -AGGAGgCGGAGCAGgAGCCC---GCuCCG- -5'
14639 5' -62.4 NC_003521.1 + 45435 0.8 0.141842
Target:  5'- gCCUCCgauuacgguacgggcGCCUCGUCCUCGGGCGucaccuucacccGGCc -3'
miRNA:   3'- aGGAGG---------------CGGAGCAGGAGCCCGCu-----------CCG- -5'
14639 5' -62.4 NC_003521.1 + 68405 0.82 0.103328
Target:  5'- cUCCUCCGCCUCGggUCC-CGcGGCGAcGGCu -3'
miRNA:   3'- -AGGAGGCGGAGC--AGGaGC-CCGCU-CCG- -5'
14639 5' -62.4 NC_003521.1 + 88453 0.71 0.469689
Target:  5'- gUCgUCCGCCUCGgCgUCGGGCugcagcgaguugaaGAGGg -3'
miRNA:   3'- -AGgAGGCGGAGCaGgAGCCCG--------------CUCCg -5'
14639 5' -62.4 NC_003521.1 + 138182 0.71 0.480962
Target:  5'- gCCUCUGUCUCGauggCCUgGGGCaacGGGGUc -3'
miRNA:   3'- aGGAGGCGGAGCa---GGAgCCCG---CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 76841 0.69 0.618317
Target:  5'- uUCCUCucuucccgcgCGuCCUCGUCCUCGG---AGGCg -3'
miRNA:   3'- -AGGAG----------GC-GGAGCAGGAGCCcgcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 191846 0.69 0.612666
Target:  5'- uUCCUCagCGCCUCGUCUaagauguugUCgauguccguccaacuGGGCGGcGGCg -3'
miRNA:   3'- -AGGAG--GCGGAGCAGG---------AG---------------CCCGCU-CCG- -5'
14639 5' -62.4 NC_003521.1 + 196869 0.69 0.59012
Target:  5'- aCCUCCaGCaaCGgcaCCgCGGGUGAGGCc -3'
miRNA:   3'- aGGAGG-CGgaGCa--GGaGCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 157068 0.69 0.580765
Target:  5'- cUUCUUCGCCagUCGUCUUCuccuGGUGAGGUc -3'
miRNA:   3'- -AGGAGGCGG--AGCAGGAGc---CCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 92162 0.69 0.571442
Target:  5'- uUCCaCCGgCUCGcCCggGGGuCGGGGCg -3'
miRNA:   3'- -AGGaGGCgGAGCaGGagCCC-GCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 214780 0.7 0.562156
Target:  5'- cCCUCCcgcucGCCgcCGUCCucuucaccgccgUCGGGCGccGGGCg -3'
miRNA:   3'- aGGAGG-----CGGa-GCAGG------------AGCCCGC--UCCG- -5'
14639 5' -62.4 NC_003521.1 + 187856 0.7 0.55291
Target:  5'- uUCCUcaCCGCCUguugcauggCGgucaccaCCUCGGGCGgcacGGGCg -3'
miRNA:   3'- -AGGA--GGCGGA---------GCa------GGAGCCCGC----UCCG- -5'
14639 5' -62.4 NC_003521.1 + 106384 0.7 0.54371
Target:  5'- cUCCgCCGCCUccucCGUCgUCGGGUggcgugaaGAGGUu -3'
miRNA:   3'- -AGGaGGCGGA----GCAGgAGCCCG--------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 226284 0.7 0.54371
Target:  5'- -gCUCgGCCguggCGUacgagcCCUCGGGCGuGGUg -3'
miRNA:   3'- agGAGgCGGa---GCA------GGAGCCCGCuCCG- -5'
14639 5' -62.4 NC_003521.1 + 154373 0.7 0.524562
Target:  5'- aCCUCUGUCgCGUCCUCGGucgccGCugccgccaaucagGAGGCg -3'
miRNA:   3'- aGGAGGCGGaGCAGGAGCC-----CG-------------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 12120 0.7 0.507462
Target:  5'- gCCgCCGCCgCGcUCCuUCGGGUGcGGCg -3'
miRNA:   3'- aGGaGGCGGaGC-AGG-AGCCCGCuCCG- -5'
14639 5' -62.4 NC_003521.1 + 71383 0.71 0.49767
Target:  5'- gCCgCCGCCgacgccgUCGUCCgCGuGaGCGAGGCg -3'
miRNA:   3'- aGGaGGCGG-------AGCAGGaGC-C-CGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 224061 0.71 0.488843
Target:  5'- cUCUUCGucacccuCCUCGUCCUCcGGCGGGcGCg -3'
miRNA:   3'- aGGAGGC-------GGAGCAGGAGcCCGCUC-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.