miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14639 5' -62.4 NC_003521.1 + 97462 0.7 0.516433
Target:  5'- cCUUCUGgcagaaguCCUCGUCCUUGGGCacguagaccagGAGGUa -3'
miRNA:   3'- aGGAGGC--------GGAGCAGGAGCCCG-----------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 100224 0.69 0.5995
Target:  5'- cUCCUCgaagcggagCGUCUCGccggccgcgaaaUCCUCGGGCGGcGCc -3'
miRNA:   3'- -AGGAG---------GCGGAGC------------AGGAGCCCGCUcCG- -5'
14639 5' -62.4 NC_003521.1 + 103850 0.68 0.665405
Target:  5'- gUCUCgGCCUCGUCCaggCuGGCGAucaGCg -3'
miRNA:   3'- aGGAGgCGGAGCAGGa--GcCCGCUc--CG- -5'
14639 5' -62.4 NC_003521.1 + 106384 0.7 0.54371
Target:  5'- cUCCgCCGCCUccucCGUCgUCGGGUggcgugaaGAGGUu -3'
miRNA:   3'- -AGGaGGCGGA----GCAGgAGCCCG--------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 106752 0.66 0.739188
Target:  5'- aCCUCCGC---GUCCa-GGGCGcccAGGCg -3'
miRNA:   3'- aGGAGGCGgagCAGGagCCCGC---UCCG- -5'
14639 5' -62.4 NC_003521.1 + 107058 0.67 0.702701
Target:  5'- -aCUCCGCCgCGUCCcCGGaaucGCcGGGCc -3'
miRNA:   3'- agGAGGCGGaGCAGGaGCC----CGcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 117475 0.66 0.788881
Target:  5'- cUCCUCCacacccggcgacggGCCU-GUCC---GGCGGGGCg -3'
miRNA:   3'- -AGGAGG--------------CGGAgCAGGagcCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 121519 0.69 0.5995
Target:  5'- aCCaUCCGCCUCa-CCUggaCGGGCGAGa- -3'
miRNA:   3'- aGG-AGGCGGAGcaGGA---GCCCGCUCcg -5'
14639 5' -62.4 NC_003521.1 + 123628 0.69 0.571442
Target:  5'- aUCUCCaCCg---CCUCGGGCGGcGGCa -3'
miRNA:   3'- aGGAGGcGGagcaGGAGCCCGCU-CCG- -5'
14639 5' -62.4 NC_003521.1 + 123772 0.69 0.618317
Target:  5'- -gCUCCGCggcCG-CCUCGGGCGAaacacuGGCc -3'
miRNA:   3'- agGAGGCGga-GCaGGAGCCCGCU------CCG- -5'
14639 5' -62.4 NC_003521.1 + 127273 0.74 0.352862
Target:  5'- cUCCUCgCGCUgguggUCGUCC-CGGcGCGAGGg -3'
miRNA:   3'- -AGGAG-GCGG-----AGCAGGaGCC-CGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 128313 0.68 0.665405
Target:  5'- cUCUCCaccgugguguaGCCgcgGUCCUCGGGC-AGGUa -3'
miRNA:   3'- aGGAGG-----------CGGag-CAGGAGCCCGcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 130284 0.68 0.665405
Target:  5'- cUCUCCGgCUa--CCU-GGGCGAGGCc -3'
miRNA:   3'- aGGAGGCgGAgcaGGAgCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 131026 0.67 0.693435
Target:  5'- cUCCUCCacGUCcCGUCUccUGGGCGGcGGCg -3'
miRNA:   3'- -AGGAGG--CGGaGCAGGa-GCCCGCU-CCG- -5'
14639 5' -62.4 NC_003521.1 + 135924 0.66 0.772685
Target:  5'- gCCUCgGCCacggccgCGggaugugcgacgCCUCGGGCgccugcgacauGAGGCa -3'
miRNA:   3'- aGGAGgCGGa------GCa-----------GGAGCCCG-----------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 136390 0.68 0.664466
Target:  5'- -aCUCCaCCUCGgCCgCGGGCcgcguguGAGGCa -3'
miRNA:   3'- agGAGGcGGAGCaGGaGCCCG-------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 138182 0.71 0.480962
Target:  5'- gCCUCUGUCUCGauggCCUgGGGCaacGGGGUc -3'
miRNA:   3'- aGGAGGCGGAGCa---GGAgCCCG---CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 139993 0.73 0.360131
Target:  5'- -aCUCgCGCUUC-UCCUCGGGCGAguGGUa -3'
miRNA:   3'- agGAG-GCGGAGcAGGAGCCCGCU--CCG- -5'
14639 5' -62.4 NC_003521.1 + 141328 0.71 0.458552
Target:  5'- cUCUUCUGCUUCGUCUUCuucugcgguucccacGGGUGcGGCg -3'
miRNA:   3'- -AGGAGGCGGAGCAGGAG---------------CCCGCuCCG- -5'
14639 5' -62.4 NC_003521.1 + 142261 0.68 0.646593
Target:  5'- cUCCUCgGCCgacUCGggCUCGGGCuGGGa -3'
miRNA:   3'- -AGGAGgCGG---AGCagGAGCCCGcUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.