miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14639 5' -62.4 NC_003521.1 + 64898 0.71 0.489723
Target:  5'- gUCCUCCuCCggcUCCUCGGGCcAGGUc -3'
miRNA:   3'- -AGGAGGcGGagcAGGAGCCCGcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 68405 0.82 0.103328
Target:  5'- cUCCUCCGCCUCGggUCC-CGcGGCGAcGGCu -3'
miRNA:   3'- -AGGAGGCGGAGC--AGGaGC-CCGCU-CCG- -5'
14639 5' -62.4 NC_003521.1 + 71383 0.71 0.49767
Target:  5'- gCCgCCGCCgacgccgUCGUCCgCGuGaGCGAGGCg -3'
miRNA:   3'- aGGaGGCGG-------AGCAGGaGC-C-CGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 72364 0.67 0.706393
Target:  5'- aUCUUCCGCCucgcccagcccguacUCGgcgUCCUCGucgaucaccagcGGCgGAGGCa -3'
miRNA:   3'- -AGGAGGCGG---------------AGC---AGGAGC------------CCG-CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 73650 0.66 0.756985
Target:  5'- gCCUCCGCCgCGgccgCCUCcaagacgccCGAGGCg -3'
miRNA:   3'- aGGAGGCGGaGCa---GGAGccc------GCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 74067 0.66 0.756985
Target:  5'- -gCUCacgCGCCgcUGUCUggCGGGCGAGGUc -3'
miRNA:   3'- agGAG---GCGGa-GCAGGa-GCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 74216 0.72 0.430112
Target:  5'- gUCUUCUGCCaCGUCCUgcgacaggUGGGCGucacGGGCa -3'
miRNA:   3'- -AGGAGGCGGaGCAGGA--------GCCCGC----UCCG- -5'
14639 5' -62.4 NC_003521.1 + 75595 0.72 0.446717
Target:  5'- cUCUUCCGCUUCGcgUUCGGGCGGcgccacGGCu -3'
miRNA:   3'- -AGGAGGCGGAGCagGAGCCCGCU------CCG- -5'
14639 5' -62.4 NC_003521.1 + 75825 0.66 0.739188
Target:  5'- gUCCUugcggCCGaUCUCGcCCUCGGGaagauGGGCg -3'
miRNA:   3'- -AGGA-----GGC-GGAGCaGGAGCCCgc---UCCG- -5'
14639 5' -62.4 NC_003521.1 + 76841 0.69 0.618317
Target:  5'- uUCCUCucuucccgcgCGuCCUCGUCCUCGG---AGGCg -3'
miRNA:   3'- -AGGAG----------GC-GGAGCAGGAGCCcgcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 83234 0.66 0.770956
Target:  5'- cCCUCgGCgcacuugaccagaUCGUCCUUGGcGUGGGGg -3'
miRNA:   3'- aGGAGgCGg------------AGCAGGAGCC-CGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 83865 0.73 0.381797
Target:  5'- cUCCUCCGuCCUCGacccagUCUUCGGGUGcaucugcGGGUg -3'
miRNA:   3'- -AGGAGGC-GGAGC------AGGAGCCCGC-------UCCG- -5'
14639 5' -62.4 NC_003521.1 + 84663 0.68 0.626799
Target:  5'- cUCCUCCGCCUCGccaccgUCgUCGGaaucguccgagacGaCGGGGUu -3'
miRNA:   3'- -AGGAGGCGGAGC------AGgAGCC-------------C-GCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 84738 0.7 0.525468
Target:  5'- aCUgCCGUCgUCGUCuugCUCGGGCGcGGCg -3'
miRNA:   3'- aGGaGGCGG-AGCAG---GAGCCCGCuCCG- -5'
14639 5' -62.4 NC_003521.1 + 87779 0.78 0.204927
Target:  5'- gCCUgggggCCGCCUCGUCgguCUCGGGCGgccuGGGCc -3'
miRNA:   3'- aGGA-----GGCGGAGCAG---GAGCCCGC----UCCG- -5'
14639 5' -62.4 NC_003521.1 + 88453 0.71 0.469689
Target:  5'- gUCgUCCGCCUCGgCgUCGGGCugcagcgaguugaaGAGGg -3'
miRNA:   3'- -AGgAGGCGGAGCaGgAGCCCG--------------CUCCg -5'
14639 5' -62.4 NC_003521.1 + 91935 0.68 0.665405
Target:  5'- cUCCUCgGCgUCGgCCaCGGcCGAGGCc -3'
miRNA:   3'- -AGGAGgCGgAGCaGGaGCCcGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 92162 0.69 0.571442
Target:  5'- uUCCaCCGgCUCGcCCggGGGuCGGGGCg -3'
miRNA:   3'- -AGGaGGCgGAGCaGGagCCC-GCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 93938 0.66 0.765747
Target:  5'- aCCgcugcCCGCCgUCGucuggcuuccUCCUCuGGGCGggagGGGCg -3'
miRNA:   3'- aGGa----GGCGG-AGC----------AGGAG-CCCGC----UCCG- -5'
14639 5' -62.4 NC_003521.1 + 94175 0.66 0.774408
Target:  5'- gUCCUCCucGCCgUCGUCg-UGGcCGGGGCc -3'
miRNA:   3'- -AGGAGG--CGG-AGCAGgaGCCcGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.