Results 21 - 40 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14639 | 5' | -62.4 | NC_003521.1 | + | 194267 | 0.66 | 0.7914 |
Target: 5'- aCCaCCGCUUCagcaCC-CGGcGCGAGGCc -3' miRNA: 3'- aGGaGGCGGAGca--GGaGCC-CGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 151083 | 0.66 | 0.7914 |
Target: 5'- uUCUggaCCGCCgaccCCUCGGGUcGGGCc -3' miRNA: 3'- -AGGa--GGCGGagcaGGAGCCCGcUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 75825 | 0.66 | 0.739188 |
Target: 5'- gUCCUugcggCCGaUCUCGcCCUCGGGaagauGGGCg -3' miRNA: 3'- -AGGA-----GGC-GGAGCaGGAGCCCgc---UCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 73650 | 0.66 | 0.756985 |
Target: 5'- gCCUCCGCCgCGgccgCCUCcaagacgccCGAGGCg -3' miRNA: 3'- aGGAGGCGGaGCa---GGAGccc------GCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 145268 | 0.66 | 0.756985 |
Target: 5'- cUCCUCgGCCUCGgcggCCagcUCGcGCGccGGCg -3' miRNA: 3'- -AGGAGgCGGAGCa---GG---AGCcCGCu-CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 167290 | 0.66 | 0.756985 |
Target: 5'- aCCUCCGucugcgacggauCCUCGucgcccaccacaUCCUcCGGGuCGAGGa -3' miRNA: 3'- aGGAGGC------------GGAGC------------AGGA-GCCC-GCUCCg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 193459 | 0.66 | 0.739188 |
Target: 5'- cUUCUCCgGCUUCGU-CUCGGGUuuuguguuGGGGUu -3' miRNA: 3'- -AGGAGG-CGGAGCAgGAGCCCG--------CUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 221779 | 0.66 | 0.739188 |
Target: 5'- aUCUCCGUUucaUCGUCUUCcucGGCG-GGCa -3' miRNA: 3'- aGGAGGCGG---AGCAGGAGc--CCGCuCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 204115 | 0.67 | 0.684126 |
Target: 5'- -aCUgCGCCUCcaccUgCUCGGGCcAGGCg -3' miRNA: 3'- agGAgGCGGAGc---AgGAGCCCGcUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 131026 | 0.67 | 0.693435 |
Target: 5'- cUCCUCCacGUCcCGUCUccUGGGCGGcGGCg -3' miRNA: 3'- -AGGAGG--CGGaGCAGGa-GCCCGCU-CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 9 | 0.67 | 0.693435 |
Target: 5'- gCCUCCGCUgcggGUCCcgggGGGUGGGGg -3' miRNA: 3'- aGGAGGCGGag--CAGGag--CCCGCUCCg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 5246 | 0.67 | 0.730167 |
Target: 5'- gUCCUcCCGCa-CGUCCcgCGGGUuguuguaccacaGGGGCc -3' miRNA: 3'- -AGGA-GGCGgaGCAGGa-GCCCG------------CUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 189332 | 0.67 | 0.721074 |
Target: 5'- aCC-CUGCUcaucaUCGucuUCCUCGGGCugccGGGGCa -3' miRNA: 3'- aGGaGGCGG-----AGC---AGGAGCCCG----CUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 197396 | 0.67 | 0.706393 |
Target: 5'- gCCgCCGCCUCcUCgUCGGGCacgcaguaggaagggGAGGg -3' miRNA: 3'- aGGaGGCGGAGcAGgAGCCCG---------------CUCCg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 107058 | 0.67 | 0.702701 |
Target: 5'- -aCUCCGCCgCGUCCcCGGaaucGCcGGGCc -3' miRNA: 3'- agGAGGCGGaGCAGGaGCC----CGcUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 240558 | 0.67 | 0.693435 |
Target: 5'- gCCUCCGCUgcggGUCCcgggGGGUGGGGg -3' miRNA: 3'- aGGAGGCGGag--CAGGag--CCCGCUCCg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 227801 | 0.67 | 0.702701 |
Target: 5'- gUUCUCCGCCucggguuucUCGUCCUCGucCGAGu- -3' miRNA: 3'- -AGGAGGCGG---------AGCAGGAGCccGCUCcg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 159892 | 0.67 | 0.701776 |
Target: 5'- cUCCUCCG-UUCGUCUUCuucGGCGAacgaggaagaggaGGCg -3' miRNA: 3'- -AGGAGGCgGAGCAGGAGc--CCGCU-------------CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 72364 | 0.67 | 0.706393 |
Target: 5'- aUCUUCCGCCucgcccagcccguacUCGgcgUCCUCGucgaucaccagcGGCgGAGGCa -3' miRNA: 3'- -AGGAGGCGG---------------AGC---AGGAGC------------CCG-CUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 50190 | 0.67 | 0.694364 |
Target: 5'- cUCCUCCGCCUCcuGUCCgguccgcccgaagagCGcGaaggucaggucGCGGGGCc -3' miRNA: 3'- -AGGAGGCGGAG--CAGGa--------------GC-C-----------CGCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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