miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14639 5' -62.4 NC_003521.1 + 107058 0.67 0.702701
Target:  5'- -aCUCCGCCgCGUCCcCGGaaucGCcGGGCc -3'
miRNA:   3'- agGAGGCGGaGCAGGaGCC----CGcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 40331 0.67 0.693435
Target:  5'- gCCUCCGCUgcggGUCCcgggGGGUGGGGg -3'
miRNA:   3'- aGGAGGCGGag--CAGGag--CCCGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 53204 0.67 0.702701
Target:  5'- cCCUCCggugagcucGCCggggaGUCCgCGGGCGAaGCg -3'
miRNA:   3'- aGGAGG---------CGGag---CAGGaGCCCGCUcCG- -5'
14639 5' -62.4 NC_003521.1 + 5246 0.67 0.730167
Target:  5'- gUCCUcCCGCa-CGUCCcgCGGGUuguuguaccacaGGGGCc -3'
miRNA:   3'- -AGGA-GGCGgaGCAGGa-GCCCG------------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 53583 0.68 0.665405
Target:  5'- cCCggggCCGCCUCGaagcUCaCUUGGcUGAGGCu -3'
miRNA:   3'- aGGa---GGCGGAGC----AG-GAGCCcGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 197204 0.68 0.637169
Target:  5'- gCCUCCuCCUCGUCCUCGuuGuCGucGCg -3'
miRNA:   3'- aGGAGGcGGAGCAGGAGCc-C-GCucCG- -5'
14639 5' -62.4 NC_003521.1 + 38233 0.68 0.637169
Target:  5'- ---gCgGCCUCGg---CGGGCGGGGCg -3'
miRNA:   3'- aggaGgCGGAGCaggaGCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 11846 0.68 0.627741
Target:  5'- gUCCUgCGCCgcccgCGcaccUCCUCGGaCGAGGa -3'
miRNA:   3'- -AGGAgGCGGa----GC----AGGAGCCcGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 84663 0.68 0.626799
Target:  5'- cUCCUCCGCCUCGccaccgUCgUCGGaaucguccgagacGaCGGGGUu -3'
miRNA:   3'- -AGGAGGCGGAGC------AGgAGCC-------------C-GCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 168427 0.68 0.637169
Target:  5'- gCCUCCGCCgcuggugaUCGacgaggacgCCgaguacgggcUGGGCGAGGCg -3'
miRNA:   3'- aGGAGGCGG--------AGCa--------GGa---------GCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 204664 0.68 0.646593
Target:  5'- gCCgUCCGggguguCCUCcUCCUCGGGCaGGGUc -3'
miRNA:   3'- aGG-AGGC------GGAGcAGGAGCCCGcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 180371 0.68 0.656007
Target:  5'- gCCUCCGCCg-GUgUUCGaagaagaaGGUGGGGCu -3'
miRNA:   3'- aGGAGGCGGagCAgGAGC--------CCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 128313 0.68 0.665405
Target:  5'- cUCUCCaccgugguguaGCCgcgGUCCUCGGGC-AGGUa -3'
miRNA:   3'- aGGAGG-----------CGGag-CAGGAGCCCGcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 207773 0.68 0.665405
Target:  5'- gUCUCCGCCUC-UCCccCGGaCGAcGGCu -3'
miRNA:   3'- aGGAGGCGGAGcAGGa-GCCcGCU-CCG- -5'
14639 5' -62.4 NC_003521.1 + 228955 0.68 0.665405
Target:  5'- gUCCUCgGaguccuCCUCGUCCgaggaggugcgCGGGCGGcGCa -3'
miRNA:   3'- -AGGAGgC------GGAGCAGGa----------GCCCGCUcCG- -5'
14639 5' -62.4 NC_003521.1 + 130284 0.68 0.665405
Target:  5'- cUCUCCGgCUa--CCU-GGGCGAGGCc -3'
miRNA:   3'- aGGAGGCgGAgcaGGAgCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 103850 0.68 0.665405
Target:  5'- gUCUCgGCCUCGUCCaggCuGGCGAucaGCg -3'
miRNA:   3'- aGGAGgCGGAGCAGGa--GcCCGCUc--CG- -5'
14639 5' -62.4 NC_003521.1 + 57554 0.68 0.655066
Target:  5'- cCCgaaaUCCuCCUCGUCCUCGcGCGccuucgaGGGCg -3'
miRNA:   3'- aGG----AGGcGGAGCAGGAGCcCGC-------UCCG- -5'
14639 5' -62.4 NC_003521.1 + 142261 0.68 0.646593
Target:  5'- cUCCUCgGCCgacUCGggCUCGGGCuGGGa -3'
miRNA:   3'- -AGGAGgCGG---AGCagGAGCCCGcUCCg -5'
14639 5' -62.4 NC_003521.1 + 91935 0.68 0.665405
Target:  5'- cUCCUCgGCgUCGgCCaCGGcCGAGGCc -3'
miRNA:   3'- -AGGAGgCGgAGCaGGaGCCcGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.