miRNA display CGI


Results 41 - 60 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14639 5' -62.4 NC_003521.1 + 123628 0.69 0.571442
Target:  5'- aUCUCCaCCg---CCUCGGGCGGcGGCa -3'
miRNA:   3'- aGGAGGcGGagcaGGAGCCCGCU-CCG- -5'
14639 5' -62.4 NC_003521.1 + 92162 0.69 0.571442
Target:  5'- uUCCaCCGgCUCGcCCggGGGuCGGGGCg -3'
miRNA:   3'- -AGGaGGCgGAGCaGGagCCC-GCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 157068 0.69 0.580765
Target:  5'- cUUCUUCGCCagUCGUCUUCuccuGGUGAGGUc -3'
miRNA:   3'- -AGGAGGCGG--AGCAGGAGc---CCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 174971 0.69 0.59012
Target:  5'- -gUUCCGUCUCGUCCUgcaGGGCcuucuuGGCc -3'
miRNA:   3'- agGAGGCGGAGCAGGAg--CCCGcu----CCG- -5'
14639 5' -62.4 NC_003521.1 + 196869 0.69 0.59012
Target:  5'- aCCUCCaGCaaCGgcaCCgCGGGUGAGGCc -3'
miRNA:   3'- aGGAGG-CGgaGCa--GGaGCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 121519 0.69 0.5995
Target:  5'- aCCaUCCGCCUCa-CCUggaCGGGCGAGa- -3'
miRNA:   3'- aGG-AGGCGGAGcaGGA---GCCCGCUCcg -5'
14639 5' -62.4 NC_003521.1 + 100224 0.69 0.5995
Target:  5'- cUCCUCgaagcggagCGUCUCGccggccgcgaaaUCCUCGGGCGGcGCc -3'
miRNA:   3'- -AGGAG---------GCGGAGC------------AGGAGCCCGCUcCG- -5'
14639 5' -62.4 NC_003521.1 + 191846 0.69 0.612666
Target:  5'- uUCCUCagCGCCUCGUCUaagauguugUCgauguccguccaacuGGGCGGcGGCg -3'
miRNA:   3'- -AGGAG--GCGGAGCAGG---------AG---------------CCCGCU-CCG- -5'
14639 5' -62.4 NC_003521.1 + 165956 0.69 0.618317
Target:  5'- ---gCCGUgUCGUgCUCGGGC-AGGCu -3'
miRNA:   3'- aggaGGCGgAGCAgGAGCCCGcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 163992 0.69 0.618317
Target:  5'- gCCUUCuCCUCGUCCucuUCGGGcCGAGcCg -3'
miRNA:   3'- aGGAGGcGGAGCAGG---AGCCC-GCUCcG- -5'
14639 5' -62.4 NC_003521.1 + 76841 0.69 0.618317
Target:  5'- uUCCUCucuucccgcgCGuCCUCGUCCUCGG---AGGCg -3'
miRNA:   3'- -AGGAG----------GC-GGAGCAGGAGCCcgcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 123772 0.69 0.618317
Target:  5'- -gCUCCGCggcCG-CCUCGGGCGAaacacuGGCc -3'
miRNA:   3'- agGAGGCGga-GCaGGAGCCCGCU------CCG- -5'
14639 5' -62.4 NC_003521.1 + 84663 0.68 0.626799
Target:  5'- cUCCUCCGCCUCGccaccgUCgUCGGaaucguccgagacGaCGGGGUu -3'
miRNA:   3'- -AGGAGGCGGAGC------AGgAGCC-------------C-GCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 209387 0.68 0.627741
Target:  5'- gUCCUCC-CCguagUCGUCUUCGgcGGCGcacaGGGCa -3'
miRNA:   3'- -AGGAGGcGG----AGCAGGAGC--CCGC----UCCG- -5'
14639 5' -62.4 NC_003521.1 + 11846 0.68 0.627741
Target:  5'- gUCCUgCGCCgcccgCGcaccUCCUCGGaCGAGGa -3'
miRNA:   3'- -AGGAgGCGGa----GC----AGGAGCCcGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 168427 0.68 0.637169
Target:  5'- gCCUCCGCCgcuggugaUCGacgaggacgCCgaguacgggcUGGGCGAGGCg -3'
miRNA:   3'- aGGAGGCGG--------AGCa--------GGa---------GCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 38233 0.68 0.637169
Target:  5'- ---gCgGCCUCGg---CGGGCGGGGCg -3'
miRNA:   3'- aggaGgCGGAGCaggaGCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 197204 0.68 0.637169
Target:  5'- gCCUCCuCCUCGUCCUCGuuGuCGucGCg -3'
miRNA:   3'- aGGAGGcGGAGCAGGAGCc-C-GCucCG- -5'
14639 5' -62.4 NC_003521.1 + 238461 0.68 0.637169
Target:  5'- ---gCgGCCUCGg---CGGGCGGGGCg -3'
miRNA:   3'- aggaGgCGGAGCaggaGCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 142261 0.68 0.646593
Target:  5'- cUCCUCgGCCgacUCGggCUCGGGCuGGGa -3'
miRNA:   3'- -AGGAGgCGG---AGCagGAGCCCGcUCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.