miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14639 5' -62.4 NC_003521.1 + 75595 0.72 0.446717
Target:  5'- cUCUUCCGCUUCGcgUUCGGGCGGcgccacGGCu -3'
miRNA:   3'- -AGGAGGCGGAGCagGAGCCCGCU------CCG- -5'
14639 5' -62.4 NC_003521.1 + 240050 0.72 0.446717
Target:  5'- gUCCUCCGCCgauggCGccugcuuggCCUcCGGcGUGGGGCu -3'
miRNA:   3'- -AGGAGGCGGa----GCa--------GGA-GCC-CGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 141328 0.71 0.458552
Target:  5'- cUCUUCUGCUUCGUCUUCuucugcgguucccacGGGUGcGGCg -3'
miRNA:   3'- -AGGAGGCGGAGCAGGAG---------------CCCGCuCCG- -5'
14639 5' -62.4 NC_003521.1 + 163085 0.71 0.463675
Target:  5'- gCCgaggCCgGCC-CGUCCUCGGGCGccAGcGCc -3'
miRNA:   3'- aGGa---GG-CGGaGCAGGAGCCCGC--UC-CG- -5'
14639 5' -62.4 NC_003521.1 + 88453 0.71 0.469689
Target:  5'- gUCgUCCGCCUCGgCgUCGGGCugcagcgaguugaaGAGGg -3'
miRNA:   3'- -AGgAGGCGGAGCaGgAGCCCG--------------CUCCg -5'
14639 5' -62.4 NC_003521.1 + 138182 0.71 0.480962
Target:  5'- gCCUCUGUCUCGauggCCUgGGGCaacGGGGUc -3'
miRNA:   3'- aGGAGGCGGAGCa---GGAgCCCG---CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 224061 0.71 0.488843
Target:  5'- cUCUUCGucacccuCCUCGUCCUCcGGCGGGcGCg -3'
miRNA:   3'- aGGAGGC-------GGAGCAGGAGcCCGCUC-CG- -5'
14639 5' -62.4 NC_003521.1 + 64898 0.71 0.489723
Target:  5'- gUCCUCCuCCggcUCCUCGGGCcAGGUc -3'
miRNA:   3'- -AGGAGGcGGagcAGGAGCCCGcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 71383 0.71 0.49767
Target:  5'- gCCgCCGCCgacgccgUCGUCCgCGuGaGCGAGGCg -3'
miRNA:   3'- aGGaGGCGG-------AGCAGGaGC-C-CGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 12120 0.7 0.507462
Target:  5'- gCCgCCGCCgCGcUCCuUCGGGUGcGGCg -3'
miRNA:   3'- aGGaGGCGGaGC-AGG-AGCCCGCuCCG- -5'
14639 5' -62.4 NC_003521.1 + 167150 0.7 0.507462
Target:  5'- -gCagCGCCUUGggcgCCUCGGGCgucuugGAGGCg -3'
miRNA:   3'- agGagGCGGAGCa---GGAGCCCG------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 97462 0.7 0.516433
Target:  5'- cCUUCUGgcagaaguCCUCGUCCUUGGGCacguagaccagGAGGUa -3'
miRNA:   3'- aGGAGGC--------GGAGCAGGAGCCCG-----------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 154373 0.7 0.524562
Target:  5'- aCCUCUGUCgCGUCCUCGGucgccGCugccgccaaucagGAGGCg -3'
miRNA:   3'- aGGAGGCGGaGCAGGAGCC-----CG-------------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 84738 0.7 0.525468
Target:  5'- aCUgCCGUCgUCGUCuugCUCGGGCGcGGCg -3'
miRNA:   3'- aGGaGGCGG-AGCAG---GAGCCCGCuCCG- -5'
14639 5' -62.4 NC_003521.1 + 106384 0.7 0.54371
Target:  5'- cUCCgCCGCCUccucCGUCgUCGGGUggcgugaaGAGGUu -3'
miRNA:   3'- -AGGaGGCGGA----GCAGgAGCCCG--------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 178773 0.7 0.54371
Target:  5'- gUCUUCaugguuGCggCGUCCgcgggaCGGGCGAGGCa -3'
miRNA:   3'- -AGGAGg-----CGgaGCAGGa-----GCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 226284 0.7 0.54371
Target:  5'- -gCUCgGCCguggCGUacgagcCCUCGGGCGuGGUg -3'
miRNA:   3'- agGAGgCGGa---GCA------GGAGCCCGCuCCG- -5'
14639 5' -62.4 NC_003521.1 + 187856 0.7 0.55291
Target:  5'- uUCCUcaCCGCCUguugcauggCGgucaccaCCUCGGGCGgcacGGGCg -3'
miRNA:   3'- -AGGA--GGCGGA---------GCa------GGAGCCCGC----UCCG- -5'
14639 5' -62.4 NC_003521.1 + 29699 0.7 0.562156
Target:  5'- --aUCCGCUgCGUCCUCGGcGCcuGGCu -3'
miRNA:   3'- aggAGGCGGaGCAGGAGCC-CGcuCCG- -5'
14639 5' -62.4 NC_003521.1 + 214780 0.7 0.562156
Target:  5'- cCCUCCcgcucGCCgcCGUCCucuucaccgccgUCGGGCGccGGGCg -3'
miRNA:   3'- aGGAGG-----CGGa-GCAGG------------AGCCCGC--UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.