miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14639 5' -62.4 NC_003521.1 + 235410 1.1 0.001294
Target:  5'- uUCCUCCGCCUCGUCCUCGGGCGAGGCc -3'
miRNA:   3'- -AGGAGGCGGAGCAGGAGCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 68405 0.82 0.103328
Target:  5'- cUCCUCCGCCUCGggUCC-CGcGGCGAcGGCu -3'
miRNA:   3'- -AGGAGGCGGAGC--AGGaGC-CCGCU-CCG- -5'
14639 5' -62.4 NC_003521.1 + 45435 0.8 0.141842
Target:  5'- gCCUCCgauuacgguacgggcGCCUCGUCCUCGGGCGucaccuucacccGGCc -3'
miRNA:   3'- aGGAGG---------------CGGAGCAGGAGCCCGCu-----------CCG- -5'
14639 5' -62.4 NC_003521.1 + 234812 0.8 0.151552
Target:  5'- cUCCUCgGCCUCGUCgUCGGGguuCGuGGCc -3'
miRNA:   3'- -AGGAGgCGGAGCAGgAGCCC---GCuCCG- -5'
14639 5' -62.4 NC_003521.1 + 153466 0.79 0.166471
Target:  5'- aCCUCgGCCUCcUCCUCGGGCuccGGCu -3'
miRNA:   3'- aGGAGgCGGAGcAGGAGCCCGcu-CCG- -5'
14639 5' -62.4 NC_003521.1 + 87779 0.78 0.204927
Target:  5'- gCCUgggggCCGCCUCGUCgguCUCGGGCGgccuGGGCc -3'
miRNA:   3'- aGGA-----GGCGGAGCAG---GAGCCCGC----UCCG- -5'
14639 5' -62.4 NC_003521.1 + 193546 0.77 0.224367
Target:  5'- aCCUUCGCCggGaUCCUCGGGCGGuuuGGCc -3'
miRNA:   3'- aGGAGGCGGagC-AGGAGCCCGCU---CCG- -5'
14639 5' -62.4 NC_003521.1 + 153070 0.77 0.224367
Target:  5'- cUCCUCCGCCgcCGgggCC-CGGGCcGGGGCc -3'
miRNA:   3'- -AGGAGGCGGa-GCa--GGaGCCCG-CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 169395 0.77 0.234662
Target:  5'- aUCC-CCGCCUCGUCCUCugucaGGUucGGGGCc -3'
miRNA:   3'- -AGGaGGCGGAGCAGGAGc----CCG--CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 48399 0.74 0.324833
Target:  5'- cUCCUUCGUCUC--CCUCGagucucGGCGAGGCg -3'
miRNA:   3'- -AGGAGGCGGAGcaGGAGC------CCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 127273 0.74 0.352862
Target:  5'- cUCCUCgCGCUgguggUCGUCC-CGGcGCGAGGg -3'
miRNA:   3'- -AGGAG-GCGG-----AGCAGGaGCC-CGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 139993 0.73 0.360131
Target:  5'- -aCUCgCGCUUC-UCCUCGGGCGAguGGUa -3'
miRNA:   3'- agGAG-GCGGAGcAGGAGCCCGCU--CCG- -5'
14639 5' -62.4 NC_003521.1 + 236532 0.73 0.360131
Target:  5'- cCCUCUGCCUUGUCgUCGuucGGCGucGCu -3'
miRNA:   3'- aGGAGGCGGAGCAGgAGC---CCGCucCG- -5'
14639 5' -62.4 NC_003521.1 + 83865 0.73 0.381797
Target:  5'- cUCCUCCGuCCUCGacccagUCUUCGGGUGcaucugcGGGUg -3'
miRNA:   3'- -AGGAGGC-GGAGC------AGGAGCCCGC-------UCCG- -5'
14639 5' -62.4 NC_003521.1 + 211441 0.73 0.390239
Target:  5'- gUCgUCCuCCUCGgCCUCGcGGuCGGGGCa -3'
miRNA:   3'- -AGgAGGcGGAGCaGGAGC-CC-GCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 147348 0.72 0.413874
Target:  5'- cUCUUCGuCCUCGUCCgauUCGGGCauGGCg -3'
miRNA:   3'- aGGAGGC-GGAGCAGG---AGCCCGcuCCG- -5'
14639 5' -62.4 NC_003521.1 + 207381 0.72 0.421946
Target:  5'- gCCUUCGCCUa--CCUgcCGGGCGAGGa -3'
miRNA:   3'- aGGAGGCGGAgcaGGA--GCCCGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 74216 0.72 0.430112
Target:  5'- gUCUUCUGCCaCGUCCUgcgacaggUGGGCGucacGGGCa -3'
miRNA:   3'- -AGGAGGCGGaGCAGGA--------GCCCGC----UCCG- -5'
14639 5' -62.4 NC_003521.1 + 240050 0.72 0.446717
Target:  5'- gUCCUCCGCCgauggCGccugcuuggCCUcCGGcGUGGGGCu -3'
miRNA:   3'- -AGGAGGCGGa----GCa--------GGA-GCC-CGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 75595 0.72 0.446717
Target:  5'- cUCUUCCGCUUCGcgUUCGGGCGGcgccacGGCu -3'
miRNA:   3'- -AGGAGGCGGAGCagGAGCCCGCU------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.