Results 41 - 60 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14639 | 5' | -62.4 | NC_003521.1 | + | 9 | 0.67 | 0.693435 |
Target: 5'- gCCUCCGCUgcggGUCCcgggGGGUGGGGg -3' miRNA: 3'- aGGAGGCGGag--CAGGag--CCCGCUCCg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 40331 | 0.67 | 0.693435 |
Target: 5'- gCCUCCGCUgcggGUCCcgggGGGUGGGGg -3' miRNA: 3'- aGGAGGCGGag--CAGGag--CCCGCUCCg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 204115 | 0.67 | 0.684126 |
Target: 5'- -aCUgCGCCUCcaccUgCUCGGGCcAGGCg -3' miRNA: 3'- agGAgGCGGAGc---AgGAGCCCGcUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 46416 | 0.67 | 0.683193 |
Target: 5'- cCCUCgGCC---UCCUCGugcgaggguauccGGCGGGGCu -3' miRNA: 3'- aGGAGgCGGagcAGGAGC-------------CCGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 166936 | 0.68 | 0.665405 |
Target: 5'- cCCaCgGCCUUGcggaUCUCGGGCGGGGg -3' miRNA: 3'- aGGaGgCGGAGCa---GGAGCCCGCUCCg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 91935 | 0.68 | 0.665405 |
Target: 5'- cUCCUCgGCgUCGgCCaCGGcCGAGGCc -3' miRNA: 3'- -AGGAGgCGgAGCaGGaGCCcGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 207773 | 0.68 | 0.665405 |
Target: 5'- gUCUCCGCCUC-UCCccCGGaCGAcGGCu -3' miRNA: 3'- aGGAGGCGGAGcAGGa-GCCcGCU-CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 103850 | 0.68 | 0.665405 |
Target: 5'- gUCUCgGCCUCGUCCaggCuGGCGAucaGCg -3' miRNA: 3'- aGGAGgCGGAGCAGGa--GcCCGCUc--CG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 130284 | 0.68 | 0.665405 |
Target: 5'- cUCUCCGgCUa--CCU-GGGCGAGGCc -3' miRNA: 3'- aGGAGGCgGAgcaGGAgCCCGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 53583 | 0.68 | 0.665405 |
Target: 5'- cCCggggCCGCCUCGaagcUCaCUUGGcUGAGGCu -3' miRNA: 3'- aGGa---GGCGGAGC----AG-GAGCCcGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 128313 | 0.68 | 0.665405 |
Target: 5'- cUCUCCaccgugguguaGCCgcgGUCCUCGGGC-AGGUa -3' miRNA: 3'- aGGAGG-----------CGGag-CAGGAGCCCGcUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 228955 | 0.68 | 0.665405 |
Target: 5'- gUCCUCgGaguccuCCUCGUCCgaggaggugcgCGGGCGGcGCa -3' miRNA: 3'- -AGGAGgC------GGAGCAGGa----------GCCCGCUcCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 136390 | 0.68 | 0.664466 |
Target: 5'- -aCUCCaCCUCGgCCgCGGGCcgcguguGAGGCa -3' miRNA: 3'- agGAGGcGGAGCaGGaGCCCG-------CUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 180371 | 0.68 | 0.656007 |
Target: 5'- gCCUCCGCCg-GUgUUCGaagaagaaGGUGGGGCu -3' miRNA: 3'- aGGAGGCGGagCAgGAGC--------CCGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 57554 | 0.68 | 0.655066 |
Target: 5'- cCCgaaaUCCuCCUCGUCCUCGcGCGccuucgaGGGCg -3' miRNA: 3'- aGG----AGGcGGAGCAGGAGCcCGC-------UCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 142261 | 0.68 | 0.646593 |
Target: 5'- cUCCUCgGCCgacUCGggCUCGGGCuGGGa -3' miRNA: 3'- -AGGAGgCGG---AGCagGAGCCCGcUCCg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 204664 | 0.68 | 0.646593 |
Target: 5'- gCCgUCCGggguguCCUCcUCCUCGGGCaGGGUc -3' miRNA: 3'- aGG-AGGC------GGAGcAGGAGCCCGcUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 38233 | 0.68 | 0.637169 |
Target: 5'- ---gCgGCCUCGg---CGGGCGGGGCg -3' miRNA: 3'- aggaGgCGGAGCaggaGCCCGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 238461 | 0.68 | 0.637169 |
Target: 5'- ---gCgGCCUCGg---CGGGCGGGGCg -3' miRNA: 3'- aggaGgCGGAGCaggaGCCCGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 197204 | 0.68 | 0.637169 |
Target: 5'- gCCUCCuCCUCGUCCUCGuuGuCGucGCg -3' miRNA: 3'- aGGAGGcGGAGCAGGAGCc-C-GCucCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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