Results 61 - 80 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14639 | 5' | -62.4 | NC_003521.1 | + | 238461 | 0.68 | 0.637169 |
Target: 5'- ---gCgGCCUCGg---CGGGCGGGGCg -3' miRNA: 3'- aggaGgCGGAGCaggaGCCCGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 11846 | 0.68 | 0.627741 |
Target: 5'- gUCCUgCGCCgcccgCGcaccUCCUCGGaCGAGGa -3' miRNA: 3'- -AGGAgGCGGa----GC----AGGAGCCcGCUCCg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 209387 | 0.68 | 0.627741 |
Target: 5'- gUCCUCC-CCguagUCGUCUUCGgcGGCGcacaGGGCa -3' miRNA: 3'- -AGGAGGcGG----AGCAGGAGC--CCGC----UCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 84663 | 0.68 | 0.626799 |
Target: 5'- cUCCUCCGCCUCGccaccgUCgUCGGaaucguccgagacGaCGGGGUu -3' miRNA: 3'- -AGGAGGCGGAGC------AGgAGCC-------------C-GCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 165956 | 0.69 | 0.618317 |
Target: 5'- ---gCCGUgUCGUgCUCGGGC-AGGCu -3' miRNA: 3'- aggaGGCGgAGCAgGAGCCCGcUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 163992 | 0.69 | 0.618317 |
Target: 5'- gCCUUCuCCUCGUCCucuUCGGGcCGAGcCg -3' miRNA: 3'- aGGAGGcGGAGCAGG---AGCCC-GCUCcG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 76841 | 0.69 | 0.618317 |
Target: 5'- uUCCUCucuucccgcgCGuCCUCGUCCUCGG---AGGCg -3' miRNA: 3'- -AGGAG----------GC-GGAGCAGGAGCCcgcUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 123772 | 0.69 | 0.618317 |
Target: 5'- -gCUCCGCggcCG-CCUCGGGCGAaacacuGGCc -3' miRNA: 3'- agGAGGCGga-GCaGGAGCCCGCU------CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 191846 | 0.69 | 0.612666 |
Target: 5'- uUCCUCagCGCCUCGUCUaagauguugUCgauguccguccaacuGGGCGGcGGCg -3' miRNA: 3'- -AGGAG--GCGGAGCAGG---------AG---------------CCCGCU-CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 121519 | 0.69 | 0.5995 |
Target: 5'- aCCaUCCGCCUCa-CCUggaCGGGCGAGa- -3' miRNA: 3'- aGG-AGGCGGAGcaGGA---GCCCGCUCcg -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 100224 | 0.69 | 0.5995 |
Target: 5'- cUCCUCgaagcggagCGUCUCGccggccgcgaaaUCCUCGGGCGGcGCc -3' miRNA: 3'- -AGGAG---------GCGGAGC------------AGGAGCCCGCUcCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 174971 | 0.69 | 0.59012 |
Target: 5'- -gUUCCGUCUCGUCCUgcaGGGCcuucuuGGCc -3' miRNA: 3'- agGAGGCGGAGCAGGAg--CCCGcu----CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 196869 | 0.69 | 0.59012 |
Target: 5'- aCCUCCaGCaaCGgcaCCgCGGGUGAGGCc -3' miRNA: 3'- aGGAGG-CGgaGCa--GGaGCCCGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 157068 | 0.69 | 0.580765 |
Target: 5'- cUUCUUCGCCagUCGUCUUCuccuGGUGAGGUc -3' miRNA: 3'- -AGGAGGCGG--AGCAGGAGc---CCGCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 123628 | 0.69 | 0.571442 |
Target: 5'- aUCUCCaCCg---CCUCGGGCGGcGGCa -3' miRNA: 3'- aGGAGGcGGagcaGGAGCCCGCU-CCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 92162 | 0.69 | 0.571442 |
Target: 5'- uUCCaCCGgCUCGcCCggGGGuCGGGGCg -3' miRNA: 3'- -AGGaGGCgGAGCaGGagCCC-GCUCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 29699 | 0.7 | 0.562156 |
Target: 5'- --aUCCGCUgCGUCCUCGGcGCcuGGCu -3' miRNA: 3'- aggAGGCGGaGCAGGAGCC-CGcuCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 214780 | 0.7 | 0.562156 |
Target: 5'- cCCUCCcgcucGCCgcCGUCCucuucaccgccgUCGGGCGccGGGCg -3' miRNA: 3'- aGGAGG-----CGGa-GCAGG------------AGCCCGC--UCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 187856 | 0.7 | 0.55291 |
Target: 5'- uUCCUcaCCGCCUguugcauggCGgucaccaCCUCGGGCGgcacGGGCg -3' miRNA: 3'- -AGGA--GGCGGA---------GCa------GGAGCCCGC----UCCG- -5' |
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14639 | 5' | -62.4 | NC_003521.1 | + | 226284 | 0.7 | 0.54371 |
Target: 5'- -gCUCgGCCguggCGUacgagcCCUCGGGCGuGGUg -3' miRNA: 3'- agGAGgCGGa---GCA------GGAGCCCGCuCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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