miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14639 5' -62.4 NC_003521.1 + 204664 0.68 0.646593
Target:  5'- gCCgUCCGggguguCCUCcUCCUCGGGCaGGGUc -3'
miRNA:   3'- aGG-AGGC------GGAGcAGGAGCCCGcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 204115 0.67 0.684126
Target:  5'- -aCUgCGCCUCcaccUgCUCGGGCcAGGCg -3'
miRNA:   3'- agGAgGCGGAGc---AgGAGCCCGcUCCG- -5'
14639 5' -62.4 NC_003521.1 + 197396 0.67 0.706393
Target:  5'- gCCgCCGCCUCcUCgUCGGGCacgcaguaggaagggGAGGg -3'
miRNA:   3'- aGGaGGCGGAGcAGgAGCCCG---------------CUCCg -5'
14639 5' -62.4 NC_003521.1 + 197204 0.68 0.637169
Target:  5'- gCCUCCuCCUCGUCCUCGuuGuCGucGCg -3'
miRNA:   3'- aGGAGGcGGAGCAGGAGCc-C-GCucCG- -5'
14639 5' -62.4 NC_003521.1 + 196869 0.69 0.59012
Target:  5'- aCCUCCaGCaaCGgcaCCgCGGGUGAGGCc -3'
miRNA:   3'- aGGAGG-CGgaGCa--GGaGCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 196448 0.66 0.7914
Target:  5'- ----aCGCacCUCGgCCUCGGGCGuGGGCc -3'
miRNA:   3'- aggagGCG--GAGCaGGAGCCCGC-UCCG- -5'
14639 5' -62.4 NC_003521.1 + 195065 0.66 0.765747
Target:  5'- cUCCUCUGUCUCGUCagagguuuCUCaGGGUcucGGCc -3'
miRNA:   3'- -AGGAGGCGGAGCAG--------GAG-CCCGcu-CCG- -5'
14639 5' -62.4 NC_003521.1 + 194267 0.66 0.7914
Target:  5'- aCCaCCGCUUCagcaCC-CGGcGCGAGGCc -3'
miRNA:   3'- aGGaGGCGGAGca--GGaGCC-CGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 193546 0.77 0.224367
Target:  5'- aCCUUCGCCggGaUCCUCGGGCGGuuuGGCc -3'
miRNA:   3'- aGGAGGCGGagC-AGGAGCCCGCU---CCG- -5'
14639 5' -62.4 NC_003521.1 + 193459 0.66 0.739188
Target:  5'- cUUCUCCgGCUUCGU-CUCGGGUuuuguguuGGGGUu -3'
miRNA:   3'- -AGGAGG-CGGAGCAgGAGCCCG--------CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 191846 0.69 0.612666
Target:  5'- uUCCUCagCGCCUCGUCUaagauguugUCgauguccguccaacuGGGCGGcGGCg -3'
miRNA:   3'- -AGGAG--GCGGAGCAGG---------AG---------------CCCGCU-CCG- -5'
14639 5' -62.4 NC_003521.1 + 189332 0.67 0.721074
Target:  5'- aCC-CUGCUcaucaUCGucuUCCUCGGGCugccGGGGCa -3'
miRNA:   3'- aGGaGGCGG-----AGC---AGGAGCCCG----CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 187856 0.7 0.55291
Target:  5'- uUCCUcaCCGCCUguugcauggCGgucaccaCCUCGGGCGgcacGGGCg -3'
miRNA:   3'- -AGGA--GGCGGA---------GCa------GGAGCCCGC----UCCG- -5'
14639 5' -62.4 NC_003521.1 + 180371 0.68 0.656007
Target:  5'- gCCUCCGCCg-GUgUUCGaagaagaaGGUGGGGCu -3'
miRNA:   3'- aGGAGGCGGagCAgGAGC--------CCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 178773 0.7 0.54371
Target:  5'- gUCUUCaugguuGCggCGUCCgcgggaCGGGCGAGGCa -3'
miRNA:   3'- -AGGAGg-----CGgaGCAGGa-----GCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 174971 0.69 0.59012
Target:  5'- -gUUCCGUCUCGUCCUgcaGGGCcuucuuGGCc -3'
miRNA:   3'- agGAGGCGGAGCAGGAg--CCCGcu----CCG- -5'
14639 5' -62.4 NC_003521.1 + 169395 0.77 0.234662
Target:  5'- aUCC-CCGCCUCGUCCUCugucaGGUucGGGGCc -3'
miRNA:   3'- -AGGaGGCGGAGCAGGAGc----CCG--CUCCG- -5'
14639 5' -62.4 NC_003521.1 + 168427 0.68 0.637169
Target:  5'- gCCUCCGCCgcuggugaUCGacgaggacgCCgaguacgggcUGGGCGAGGCg -3'
miRNA:   3'- aGGAGGCGG--------AGCa--------GGa---------GCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 167290 0.66 0.756985
Target:  5'- aCCUCCGucugcgacggauCCUCGucgcccaccacaUCCUcCGGGuCGAGGa -3'
miRNA:   3'- aGGAGGC------------GGAGC------------AGGA-GCCC-GCUCCg -5'
14639 5' -62.4 NC_003521.1 + 167150 0.7 0.507462
Target:  5'- -gCagCGCCUUGggcgCCUCGGGCgucuugGAGGCg -3'
miRNA:   3'- agGagGCGGAGCa---GGAGCCCG------CUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.