miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14639 5' -62.4 NC_003521.1 + 240558 0.67 0.693435
Target:  5'- gCCUCCGCUgcggGUCCcgggGGGUGGGGg -3'
miRNA:   3'- aGGAGGCGGag--CAGGag--CCCGCUCCg -5'
14639 5' -62.4 NC_003521.1 + 240050 0.72 0.446717
Target:  5'- gUCCUCCGCCgauggCGccugcuuggCCUcCGGcGUGGGGCu -3'
miRNA:   3'- -AGGAGGCGGa----GCa--------GGA-GCC-CGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 238461 0.68 0.637169
Target:  5'- ---gCgGCCUCGg---CGGGCGGGGCg -3'
miRNA:   3'- aggaGgCGGAGCaggaGCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 236590 0.66 0.739188
Target:  5'- cUCC-CCGUCUCgGUCCUCcucccgGGGCc-GGCu -3'
miRNA:   3'- -AGGaGGCGGAG-CAGGAG------CCCGcuCCG- -5'
14639 5' -62.4 NC_003521.1 + 236532 0.73 0.360131
Target:  5'- cCCUCUGCCUUGUCgUCGuucGGCGucGCu -3'
miRNA:   3'- aGGAGGCGGAGCAGgAGC---CCGCucCG- -5'
14639 5' -62.4 NC_003521.1 + 235410 1.1 0.001294
Target:  5'- uUCCUCCGCCUCGUCCUCGGGCGAGGCc -3'
miRNA:   3'- -AGGAGGCGGAGCAGGAGCCCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 234812 0.8 0.151552
Target:  5'- cUCCUCgGCCUCGUCgUCGGGguuCGuGGCc -3'
miRNA:   3'- -AGGAGgCGGAGCAGgAGCCC---GCuCCG- -5'
14639 5' -62.4 NC_003521.1 + 232980 0.66 0.774408
Target:  5'- gCCgUCCGCCacccccUCGUCUUCuGGCGccggauGGCc -3'
miRNA:   3'- aGG-AGGCGG------AGCAGGAGcCCGCu-----CCG- -5'
14639 5' -62.4 NC_003521.1 + 228955 0.68 0.665405
Target:  5'- gUCCUCgGaguccuCCUCGUCCgaggaggugcgCGGGCGGcGCa -3'
miRNA:   3'- -AGGAGgC------GGAGCAGGa----------GCCCGCUcCG- -5'
14639 5' -62.4 NC_003521.1 + 227801 0.67 0.702701
Target:  5'- gUUCUCCGCCucggguuucUCGUCCUCGucCGAGu- -3'
miRNA:   3'- -AGGAGGCGG---------AGCAGGAGCccGCUCcg -5'
14639 5' -62.4 NC_003521.1 + 226284 0.7 0.54371
Target:  5'- -gCUCgGCCguggCGUacgagcCCUCGGGCGuGGUg -3'
miRNA:   3'- agGAGgCGGa---GCA------GGAGCCCGCuCCG- -5'
14639 5' -62.4 NC_003521.1 + 224061 0.71 0.488843
Target:  5'- cUCUUCGucacccuCCUCGUCCUCcGGCGGGcGCg -3'
miRNA:   3'- aGGAGGC-------GGAGCAGGAGcCCGCUC-CG- -5'
14639 5' -62.4 NC_003521.1 + 223755 0.66 0.790562
Target:  5'- aUCCUCCcacuCgUCGUCCUCGcugucGGCGccguuaccgccguGGGCc -3'
miRNA:   3'- -AGGAGGc---GgAGCAGGAGC-----CCGC-------------UCCG- -5'
14639 5' -62.4 NC_003521.1 + 221779 0.66 0.739188
Target:  5'- aUCUCCGUUucaUCGUCUUCcucGGCG-GGCa -3'
miRNA:   3'- aGGAGGCGG---AGCAGGAGc--CCGCuCCG- -5'
14639 5' -62.4 NC_003521.1 + 221384 0.66 0.751683
Target:  5'- gUCCUCCuCUUCGUCUUCccgguccugccGgcugcaguuguugucGGCGAGGCu -3'
miRNA:   3'- -AGGAGGcGGAGCAGGAG-----------C---------------CCGCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 214780 0.7 0.562156
Target:  5'- cCCUCCcgcucGCCgcCGUCCucuucaccgccgUCGGGCGccGGGCg -3'
miRNA:   3'- aGGAGG-----CGGa-GCAGG------------AGCCCGC--UCCG- -5'
14639 5' -62.4 NC_003521.1 + 211441 0.73 0.390239
Target:  5'- gUCgUCCuCCUCGgCCUCGcGGuCGGGGCa -3'
miRNA:   3'- -AGgAGGcGGAGCaGGAGC-CC-GCUCCG- -5'
14639 5' -62.4 NC_003521.1 + 209387 0.68 0.627741
Target:  5'- gUCCUCC-CCguagUCGUCUUCGgcGGCGcacaGGGCa -3'
miRNA:   3'- -AGGAGGcGG----AGCAGGAGC--CCGC----UCCG- -5'
14639 5' -62.4 NC_003521.1 + 207773 0.68 0.665405
Target:  5'- gUCUCCGCCUC-UCCccCGGaCGAcGGCu -3'
miRNA:   3'- aGGAGGCGGAGcAGGa-GCCcGCU-CCG- -5'
14639 5' -62.4 NC_003521.1 + 207381 0.72 0.421946
Target:  5'- gCCUUCGCCUa--CCUgcCGGGCGAGGa -3'
miRNA:   3'- aGGAGGCGGAgcaGGA--GCCCGCUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.