Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14640 | 3' | -52.5 | NC_003521.1 | + | 111163 | 0.72 | 0.893542 |
Target: 5'- gCGUGAGauuguacgaauucACGUGCaCGGGgacgUUGAGCACc -3' miRNA: 3'- -GCGCUU-------------UGUACG-GCCCaa--AGCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 113356 | 0.66 | 0.992366 |
Target: 5'- aGgGGGACggGCCGGGgg-CGAGgAg -3' miRNA: 3'- gCgCUUUGuaCGGCCCaaaGCUCgUg -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 119495 | 0.73 | 0.850812 |
Target: 5'- gGUGAAGCcguugucgccAUGCCGGGUcaggugCGGGUACg -3' miRNA: 3'- gCGCUUUG----------UACGGCCCAaa----GCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 119583 | 0.67 | 0.985667 |
Target: 5'- uGCaGGAACAcGCUGGGcggCGGGUGCa -3' miRNA: 3'- gCG-CUUUGUaCGGCCCaaaGCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 124259 | 0.74 | 0.800404 |
Target: 5'- cCGCGcgGCAUGCUuGGUgucugCGGGCGCg -3' miRNA: 3'- -GCGCuuUGUACGGcCCAaa---GCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 124440 | 0.69 | 0.966695 |
Target: 5'- gGCGAGACGUgGuuGGGccgCGgcGGCACg -3' miRNA: 3'- gCGCUUUGUA-CggCCCaaaGC--UCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 126703 | 0.68 | 0.983906 |
Target: 5'- gGCG-AACAUGCCGG----UGAGCAg -3' miRNA: 3'- gCGCuUUGUACGGCCcaaaGCUCGUg -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 130742 | 0.72 | 0.873467 |
Target: 5'- aGuCGGGACGUGUCGGcGggcgCGAGCGCc -3' miRNA: 3'- gC-GCUUUGUACGGCC-Caaa-GCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 131109 | 0.66 | 0.994921 |
Target: 5'- gGCGggGCGgcgcggcUGCCGGGaagggacAGCGCg -3' miRNA: 3'- gCGCuuUGU-------ACGGCCCaaagc--UCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 140190 | 0.72 | 0.866122 |
Target: 5'- gGCGGGACG-GCCGGuUUUCGAGguCc -3' miRNA: 3'- gCGCUUUGUaCGGCCcAAAGCUCguG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 142716 | 0.66 | 0.992263 |
Target: 5'- cCGCGAguccucgGACAUGU--GGUccUUCGAGUACg -3' miRNA: 3'- -GCGCU-------UUGUACGgcCCA--AAGCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 148902 | 0.68 | 0.983906 |
Target: 5'- aCGCcgaGGAGCGccGCCGcGGcaUCGAGCACc -3' miRNA: 3'- -GCG---CUUUGUa-CGGC-CCaaAGCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 149160 | 0.7 | 0.934545 |
Target: 5'- uGCGGAAUgcGCCaGGGagccgCGGGCACg -3' miRNA: 3'- gCGCUUUGuaCGG-CCCaaa--GCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 152363 | 0.68 | 0.977636 |
Target: 5'- -cUGggGCcgGCCGGGg--CG-GCGCg -3' miRNA: 3'- gcGCuuUGuaCGGCCCaaaGCuCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 154002 | 0.67 | 0.985667 |
Target: 5'- uGCGcAGCAcGCaCGGGUcgCGcAGCACc -3' miRNA: 3'- gCGCuUUGUaCG-GCCCAaaGC-UCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 155331 | 0.69 | 0.956326 |
Target: 5'- cCGCGGGucCcgGCgGGGgcgCGGGCACc -3' miRNA: 3'- -GCGCUUu-GuaCGgCCCaaaGCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 155394 | 0.69 | 0.966695 |
Target: 5'- aCGaCGAGGCcgGCgGGGggcUGGGCACc -3' miRNA: 3'- -GC-GCUUUGuaCGgCCCaaaGCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 163671 | 0.68 | 0.972558 |
Target: 5'- uGCGGAGC-UGCUcaacaaguGGGUcUCGcAGCGCa -3' miRNA: 3'- gCGCUUUGuACGG--------CCCAaAGC-UCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 165873 | 0.71 | 0.906897 |
Target: 5'- aGCGGugcACGUGCuCGGGcggCGGGUACa -3' miRNA: 3'- gCGCUu--UGUACG-GCCCaaaGCUCGUG- -5' |
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14640 | 3' | -52.5 | NC_003521.1 | + | 166226 | 0.66 | 0.992366 |
Target: 5'- gGCGAGGCGcGCCGGccg-CGGGaCGCc -3' miRNA: 3'- gCGCUUUGUaCGGCCcaaaGCUC-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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