miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 3' -52.5 NC_003521.1 + 77669 0.7 0.939366
Target:  5'- uCGgGAGACAgcagGCCGGG----GGGCACg -3'
miRNA:   3'- -GCgCUUUGUa---CGGCCCaaagCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 79045 0.74 0.809229
Target:  5'- gCGUGAcaGACAUGgcguaggggguCCGGGgcUCGGGCACc -3'
miRNA:   3'- -GCGCU--UUGUAC-----------GGCCCaaAGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 82764 0.66 0.994995
Target:  5'- aCGCGcGACcgG-CGGGccgUgGAGCACa -3'
miRNA:   3'- -GCGCuUUGuaCgGCCCaa-AgCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 84538 0.68 0.979898
Target:  5'- aGCGAGAC--GCUGGGgggcUUgGAGUACu -3'
miRNA:   3'- gCGCUUUGuaCGGCCCa---AAgCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 86740 0.67 0.987277
Target:  5'- aCGCGGAACAUgaggagGCUGGGcacCGAgagGCGCg -3'
miRNA:   3'- -GCGCUUUGUA------CGGCCCaaaGCU---CGUG- -5'
14640 3' -52.5 NC_003521.1 + 88293 0.69 0.969728
Target:  5'- aGC--AGCGUGCUGGGgc-UGAGCGCc -3'
miRNA:   3'- gCGcuUUGUACGGCCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 92685 0.68 0.972558
Target:  5'- gGCGAG--GUGCCGGGUcccUGGGaCACg -3'
miRNA:   3'- gCGCUUugUACGGCCCAaa-GCUC-GUG- -5'
14640 3' -52.5 NC_003521.1 + 92730 0.67 0.990075
Target:  5'- aGCGugGC--GCCGGGaccaGAGCACg -3'
miRNA:   3'- gCGCuuUGuaCGGCCCaaagCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 96859 0.67 0.988743
Target:  5'- gGCGGAAg--GCCGGGUggu-AGCACu -3'
miRNA:   3'- gCGCUUUguaCGGCCCAaagcUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 97512 0.66 0.995686
Target:  5'- aGCGAGACcucgcagaGCuCGGGguggUCGAGgCGCu -3'
miRNA:   3'- gCGCUUUGua------CG-GCCCaa--AGCUC-GUG- -5'
14640 3' -52.5 NC_003521.1 + 98972 0.7 0.939366
Target:  5'- gGUGAGGCgGUGCCGGGagcCGuaGGCGCg -3'
miRNA:   3'- gCGCUUUG-UACGGCCCaaaGC--UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 101119 0.71 0.929487
Target:  5'- cCGCGAGGgG-GgCGGGUcggCGGGCACg -3'
miRNA:   3'- -GCGCUUUgUaCgGCCCAaa-GCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 102043 0.78 0.614214
Target:  5'- gCGCGcAGCAcgGCCGGGU--UGAGCACu -3'
miRNA:   3'- -GCGCuUUGUa-CGGCCCAaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 102653 0.68 0.981986
Target:  5'- cCGUGAAGCGgcUGUCGGGcacgugcUUGAGCAg -3'
miRNA:   3'- -GCGCUUUGU--ACGGCCCaa-----AGCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 102982 0.68 0.979898
Target:  5'- gGCGggGCGgcccaGCCGcGGcg-UGAGCGCc -3'
miRNA:   3'- gCGCuuUGUa----CGGC-CCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 105948 0.69 0.956326
Target:  5'- gCGCGGAugAUGaCCGuGUgUCGGGUGCg -3'
miRNA:   3'- -GCGCUUugUAC-GGCcCAaAGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 106002 0.68 0.972558
Target:  5'- gGCgGggGCAcguucaugagcUGCCaGGgcUCGGGCGCg -3'
miRNA:   3'- gCG-CuuUGU-----------ACGGcCCaaAGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 106553 0.69 0.969728
Target:  5'- gCGCGAGugG-GCCGGucgcgaGAGCACg -3'
miRNA:   3'- -GCGCUUugUaCGGCCcaaag-CUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 107350 0.66 0.995686
Target:  5'- aGCGGAACGUGCUGuagacccaGGUcaCGAGguCc -3'
miRNA:   3'- gCGCUUUGUACGGC--------CCAaaGCUCguG- -5'
14640 3' -52.5 NC_003521.1 + 109503 0.66 0.994995
Target:  5'- aGCGAGugGUcgcGCCGGccgcugcUCGAGCAg -3'
miRNA:   3'- gCGCUUugUA---CGGCCcaa----AGCUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.