miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 3' -52.5 NC_003521.1 + 168470 0.66 0.995686
Target:  5'- gGCGAGGCGgaagaugaccUGCUGGuGcagUUCGAGC-Cg -3'
miRNA:   3'- gCGCUUUGU----------ACGGCC-Ca--AAGCUCGuG- -5'
14640 3' -52.5 NC_003521.1 + 166226 0.66 0.992366
Target:  5'- gGCGAGGCGcGCCGGccg-CGGGaCGCc -3'
miRNA:   3'- gCGCUUUGUaCGGCCcaaaGCUC-GUG- -5'
14640 3' -52.5 NC_003521.1 + 165873 0.71 0.906897
Target:  5'- aGCGGugcACGUGCuCGGGcggCGGGUACa -3'
miRNA:   3'- gCGCUu--UGUACG-GCCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 163671 0.68 0.972558
Target:  5'- uGCGGAGC-UGCUcaacaaguGGGUcUCGcAGCGCa -3'
miRNA:   3'- gCGCUUUGuACGG--------CCCAaAGC-UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 155394 0.69 0.966695
Target:  5'- aCGaCGAGGCcgGCgGGGggcUGGGCACc -3'
miRNA:   3'- -GC-GCUUUGuaCGgCCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 155331 0.69 0.956326
Target:  5'- cCGCGGGucCcgGCgGGGgcgCGGGCACc -3'
miRNA:   3'- -GCGCUUu-GuaCGgCCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 154002 0.67 0.985667
Target:  5'- uGCGcAGCAcGCaCGGGUcgCGcAGCACc -3'
miRNA:   3'- gCGCuUUGUaCG-GCCCAaaGC-UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 152363 0.68 0.977636
Target:  5'- -cUGggGCcgGCCGGGg--CG-GCGCg -3'
miRNA:   3'- gcGCuuUGuaCGGCCCaaaGCuCGUG- -5'
14640 3' -52.5 NC_003521.1 + 149160 0.7 0.934545
Target:  5'- uGCGGAAUgcGCCaGGGagccgCGGGCACg -3'
miRNA:   3'- gCGCUUUGuaCGG-CCCaaa--GCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 148902 0.68 0.983906
Target:  5'- aCGCcgaGGAGCGccGCCGcGGcaUCGAGCACc -3'
miRNA:   3'- -GCG---CUUUGUa-CGGC-CCaaAGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 142716 0.66 0.992263
Target:  5'- cCGCGAguccucgGACAUGU--GGUccUUCGAGUACg -3'
miRNA:   3'- -GCGCU-------UUGUACGgcCCA--AAGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 140190 0.72 0.866122
Target:  5'- gGCGGGACG-GCCGGuUUUCGAGguCc -3'
miRNA:   3'- gCGCUUUGUaCGGCCcAAAGCUCguG- -5'
14640 3' -52.5 NC_003521.1 + 131109 0.66 0.994921
Target:  5'- gGCGggGCGgcgcggcUGCCGGGaagggacAGCGCg -3'
miRNA:   3'- gCGCuuUGU-------ACGGCCCaaagc--UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 130742 0.72 0.873467
Target:  5'- aGuCGGGACGUGUCGGcGggcgCGAGCGCc -3'
miRNA:   3'- gC-GCUUUGUACGGCC-Caaa-GCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 126703 0.68 0.983906
Target:  5'- gGCG-AACAUGCCGG----UGAGCAg -3'
miRNA:   3'- gCGCuUUGUACGGCCcaaaGCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 124440 0.69 0.966695
Target:  5'- gGCGAGACGUgGuuGGGccgCGgcGGCACg -3'
miRNA:   3'- gCGCUUUGUA-CggCCCaaaGC--UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 124259 0.74 0.800404
Target:  5'- cCGCGcgGCAUGCUuGGUgucugCGGGCGCg -3'
miRNA:   3'- -GCGCuuUGUACGGcCCAaa---GCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 119583 0.67 0.985667
Target:  5'- uGCaGGAACAcGCUGGGcggCGGGUGCa -3'
miRNA:   3'- gCG-CUUUGUaCGGCCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 119495 0.73 0.850812
Target:  5'- gGUGAAGCcguugucgccAUGCCGGGUcaggugCGGGUACg -3'
miRNA:   3'- gCGCUUUG----------UACGGCCCAaa----GCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 113356 0.66 0.992366
Target:  5'- aGgGGGACggGCCGGGgg-CGAGgAg -3'
miRNA:   3'- gCgCUUUGuaCGGCCCaaaGCUCgUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.