miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 3' -52.5 NC_003521.1 + 98972 0.7 0.939366
Target:  5'- gGUGAGGCgGUGCCGGGagcCGuaGGCGCg -3'
miRNA:   3'- gCGCUUUG-UACGGCCCaaaGC--UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 178802 0.7 0.948306
Target:  5'- gGCGAGGCAUGCCcGG---CGGGCGg -3'
miRNA:   3'- gCGCUUUGUACGGcCCaaaGCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 155331 0.69 0.956326
Target:  5'- cCGCGGGucCcgGCgGGGgcgCGGGCACc -3'
miRNA:   3'- -GCGCUUu-GuaCGgCCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 105948 0.69 0.956326
Target:  5'- gCGCGGAugAUGaCCGuGUgUCGGGUGCg -3'
miRNA:   3'- -GCGCUUugUAC-GGCcCAaAGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 124440 0.69 0.966695
Target:  5'- gGCGAGACGUgGuuGGGccgCGgcGGCACg -3'
miRNA:   3'- gCGCUUUGUA-CggCCCaaaGC--UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 155394 0.69 0.966695
Target:  5'- aCGaCGAGGCcgGCgGGGggcUGGGCACc -3'
miRNA:   3'- -GC-GCUUUGuaCGgCCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 88293 0.69 0.969728
Target:  5'- aGC--AGCGUGCUGGGgc-UGAGCGCc -3'
miRNA:   3'- gCGcuUUGUACGGCCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 106553 0.69 0.969728
Target:  5'- gCGCGAGugG-GCCGGucgcgaGAGCACg -3'
miRNA:   3'- -GCGCUUugUaCGGCCcaaag-CUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 163671 0.68 0.972558
Target:  5'- uGCGGAGC-UGCUcaacaaguGGGUcUCGcAGCGCa -3'
miRNA:   3'- gCGCUUUGuACGG--------CCCAaAGC-UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 106002 0.68 0.972558
Target:  5'- gGCgGggGCAcguucaugagcUGCCaGGgcUCGGGCGCg -3'
miRNA:   3'- gCG-CuuUGU-----------ACGGcCCaaAGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 92685 0.68 0.972558
Target:  5'- gGCGAG--GUGCCGGGUcccUGGGaCACg -3'
miRNA:   3'- gCGCUUugUACGGCCCAaa-GCUC-GUG- -5'
14640 3' -52.5 NC_003521.1 + 81 0.68 0.977636
Target:  5'- uGCGGcgGGCcgGCCGGucggacguGUUUCGGGCcgGCg -3'
miRNA:   3'- gCGCU--UUGuaCGGCC--------CAAAGCUCG--UG- -5'
14640 3' -52.5 NC_003521.1 + 152363 0.68 0.977636
Target:  5'- -cUGggGCcgGCCGGGg--CG-GCGCg -3'
miRNA:   3'- gcGCuuUGuaCGGCCCaaaGCuCGUG- -5'
14640 3' -52.5 NC_003521.1 + 200309 0.68 0.977636
Target:  5'- uGCGGcgGGCcgGCCGGucggacguGUUUCGGGCcgGCg -3'
miRNA:   3'- gCGCU--UUGuaCGGCC--------CAAAGCUCG--UG- -5'
14640 3' -52.5 NC_003521.1 + 64363 0.68 0.977636
Target:  5'- gGCGcccuGGACAUGcCCGaGGUg-CGGGCGCg -3'
miRNA:   3'- gCGC----UUUGUAC-GGC-CCAaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 240630 0.68 0.977636
Target:  5'- uGCGGcgGGCcgGCCGGucggacguGUUUCGGGCcgGCg -3'
miRNA:   3'- gCGCU--UUGuaCGGCC--------CAAAGCUCG--UG- -5'
14640 3' -52.5 NC_003521.1 + 173385 0.68 0.979898
Target:  5'- uCGgGggGCAUGCUGGuGUUgcucaGGGCGu -3'
miRNA:   3'- -GCgCuuUGUACGGCC-CAAag---CUCGUg -5'
14640 3' -52.5 NC_003521.1 + 74470 0.68 0.979898
Target:  5'- aGCGAGcACGUcCUGGGcUUCGAGCu- -3'
miRNA:   3'- gCGCUU-UGUAcGGCCCaAAGCUCGug -5'
14640 3' -52.5 NC_003521.1 + 102982 0.68 0.979898
Target:  5'- gGCGggGCGgcccaGCCGcGGcg-UGAGCGCc -3'
miRNA:   3'- gCGCuuUGUa----CGGC-CCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 84538 0.68 0.979898
Target:  5'- aGCGAGAC--GCUGGGgggcUUgGAGUACu -3'
miRNA:   3'- gCGCUUUGuaCGGCCCa---AAgCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.