miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 3' -52.5 NC_003521.1 + 240630 0.68 0.977636
Target:  5'- uGCGGcgGGCcgGCCGGucggacguGUUUCGGGCcgGCg -3'
miRNA:   3'- gCGCU--UUGuaCGGCC--------CAAAGCUCG--UG- -5'
14640 3' -52.5 NC_003521.1 + 239444 0.67 0.99128
Target:  5'- uCGUaGAACGUGUCGGGguccaGcAGCACg -3'
miRNA:   3'- -GCGcUUUGUACGGCCCaaag-C-UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 235581 0.67 0.988882
Target:  5'- cCGCGGGACGUGCgGGaGgacgagaggcggacUCGGGCGg -3'
miRNA:   3'- -GCGCUUUGUACGgCC-Caa------------AGCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 235530 1.11 0.007276
Target:  5'- cCGCGAAACAUGCCGGGUUUCGAGCACg -3'
miRNA:   3'- -GCGCUUUGUACGGCCCAAAGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 229503 0.66 0.994995
Target:  5'- aGCGAcgucgAACGUGCCGGuga--GAGUAUa -3'
miRNA:   3'- gCGCU-----UUGUACGGCCcaaagCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 224020 0.66 0.992366
Target:  5'- gGCGGgcccGGCG-GUCGGGg--CGGGCGCc -3'
miRNA:   3'- gCGCU----UUGUaCGGCCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 217648 0.66 0.995621
Target:  5'- uCGgGggGCAUGgcgggauCCGGGgguuuccaCGGGCGCu -3'
miRNA:   3'- -GCgCuuUGUAC-------GGCCCaaa-----GCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 215233 0.67 0.990075
Target:  5'- aGCGAAGCccGUCaGGGUgaaGAGCGa -3'
miRNA:   3'- gCGCUUUGuaCGG-CCCAaagCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 212650 0.74 0.791429
Target:  5'- gGCGGAGCAUGCaGGGUaUC-AGCAUg -3'
miRNA:   3'- gCGCUUUGUACGgCCCAaAGcUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 206711 0.66 0.993343
Target:  5'- uCGCGAuACGUGCgGGcGg--CGGGCu- -3'
miRNA:   3'- -GCGCUuUGUACGgCC-CaaaGCUCGug -5'
14640 3' -52.5 NC_003521.1 + 206172 0.68 0.983906
Target:  5'- aGCccaGGAGCAgggcgGCCaGGGccgCGAGCACg -3'
miRNA:   3'- gCG---CUUUGUa----CGG-CCCaaaGCUCGUG- -5'
14640 3' -52.5 NC_003521.1 + 203717 0.66 0.99325
Target:  5'- aGCGAcggcAGCAgcaGCCGGGg--CGAcacugucGCACg -3'
miRNA:   3'- gCGCU----UUGUa--CGGCCCaaaGCU-------CGUG- -5'
14640 3' -52.5 NC_003521.1 + 200804 0.67 0.988743
Target:  5'- uGCGc-ACGUGCCuGGGcUUCGAGUc- -3'
miRNA:   3'- gCGCuuUGUACGG-CCCaAAGCUCGug -5'
14640 3' -52.5 NC_003521.1 + 200309 0.68 0.977636
Target:  5'- uGCGGcgGGCcgGCCGGucggacguGUUUCGGGCcgGCg -3'
miRNA:   3'- gCGCU--UUGuaCGGCC--------CAAAGCUCG--UG- -5'
14640 3' -52.5 NC_003521.1 + 195753 0.75 0.763685
Target:  5'- aCGCGGAAgAUGuCCGGGUUUCc-GUACa -3'
miRNA:   3'- -GCGCUUUgUAC-GGCCCAAAGcuCGUG- -5'
14640 3' -52.5 NC_003521.1 + 193274 0.74 0.800404
Target:  5'- uGCGGAGCggGUGCCGGGa--CGGGCGu -3'
miRNA:   3'- gCGCUUUG--UACGGCCCaaaGCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 186745 0.71 0.929487
Target:  5'- gGCGAGccCAUGCUGGGgcUCGgcGGCAUc -3'
miRNA:   3'- gCGCUUu-GUACGGCCCaaAGC--UCGUG- -5'
14640 3' -52.5 NC_003521.1 + 178802 0.7 0.948306
Target:  5'- gGCGAGGCAUGCCcGG---CGGGCGg -3'
miRNA:   3'- gCGCUUUGUACGGcCCaaaGCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 177898 0.66 0.994216
Target:  5'- gGCGGAACGaG-CGGGg--CGAGCGg -3'
miRNA:   3'- gCGCUUUGUaCgGCCCaaaGCUCGUg -5'
14640 3' -52.5 NC_003521.1 + 173385 0.68 0.979898
Target:  5'- uCGgGggGCAUGCUGGuGUUgcucaGGGCGu -3'
miRNA:   3'- -GCgCuuUGUACGGCC-CAAag---CUCGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.