Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14640 | 5' | -54.8 | NC_003521.1 | + | 138317 | 0.69 | 0.92272 |
Target: 5'- -cGUGGccgACAugGACCUGCGGcugcgcGACGg -3' miRNA: 3'- gaCACCa--UGUugUUGGGCGCC------CUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 139495 | 0.66 | 0.978631 |
Target: 5'- ----cGUACAccGCAACCCGCaGGaGACGg -3' miRNA: 3'- gacacCAUGU--UGUUGGGCG-CC-CUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 142732 | 0.68 | 0.933489 |
Target: 5'- aUGUGGUccuucgaguacgaagGCGACGACggggugaccagcguCCGCGGcGGCGUc -3' miRNA: 3'- gACACCA---------------UGUUGUUG--------------GGCGCC-CUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 148461 | 0.68 | 0.927973 |
Target: 5'- -gGUGcGUGCugauGACGaaaaGCCCGCGGGuCGUu -3' miRNA: 3'- gaCAC-CAUG----UUGU----UGGGCGCCCuGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 149055 | 0.66 | 0.980775 |
Target: 5'- gUGUGGgGgGAUgcggGACCCGCGGGGu-- -3' miRNA: 3'- gACACCaUgUUG----UUGGGCGCCCUgca -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 155430 | 0.66 | 0.980775 |
Target: 5'- gCUGUGcGaGCuggcCGACCCGCuGGGCGa -3' miRNA: 3'- -GACAC-CaUGuu--GUUGGGCGcCCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 164482 | 0.66 | 0.978631 |
Target: 5'- --cUGGUGCGcaagACGGCCUGCGaguucgucaaGGGCGUg -3' miRNA: 3'- gacACCAUGU----UGUUGGGCGC----------CCUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 165123 | 0.67 | 0.958446 |
Target: 5'- gCUGUGGUGCgGACGGgggcuggaCCGCGGugccGGCGUg -3' miRNA: 3'- -GACACCAUG-UUGUUg-------GGCGCC----CUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 166212 | 0.71 | 0.826465 |
Target: 5'- gCUGuUGGcGCGGCGGCgaggcgcgccggCCGCGGGACGc -3' miRNA: 3'- -GAC-ACCaUGUUGUUG------------GGCGCCCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 167942 | 0.68 | 0.94672 |
Target: 5'- -cGUGuaGCGugAGCCUGCGGuGACGa -3' miRNA: 3'- gaCACcaUGUugUUGGGCGCC-CUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 168118 | 0.71 | 0.834623 |
Target: 5'- -cGUGGaucgccgaggACGACAGCgCCGUGGGugGa -3' miRNA: 3'- gaCACCa---------UGUUGUUG-GGCGCCCugCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 173242 | 0.69 | 0.899448 |
Target: 5'- -cGUGuugGCGACucugGCCCGCGGGGCc- -3' miRNA: 3'- gaCACca-UGUUGu---UGGGCGCCCUGca -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 174057 | 0.77 | 0.520612 |
Target: 5'- uCUG-GGccgGCGGCAucACCCGCGGGAUGUc -3' miRNA: 3'- -GACaCCa--UGUUGU--UGGGCGCCCUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 178779 | 0.68 | 0.950847 |
Target: 5'- --aUGGuUGCGGCgu-CCGCGGGACGg -3' miRNA: 3'- gacACC-AUGUUGuugGGCGCCCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 182276 | 0.69 | 0.92272 |
Target: 5'- uUGaGGUACuGCGuGCCCGCGgGGAUGg -3' miRNA: 3'- gACaCCAUGuUGU-UGGGCGC-CCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 184193 | 0.68 | 0.927973 |
Target: 5'- -cGUGGUGCgcuucuucGugGACCUcUGGGACGUg -3' miRNA: 3'- gaCACCAUG--------UugUUGGGcGCCCUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 185188 | 0.69 | 0.9211 |
Target: 5'- cCUGUGGaGCGugAcgcccucgguguggGCCgCGCGGGACu- -3' miRNA: 3'- -GACACCaUGUugU--------------UGG-GCGCCCUGca -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 187498 | 0.72 | 0.795757 |
Target: 5'- -gGUGGUcACGACGAUCCGacgagacggcuccucCGGGACGa -3' miRNA: 3'- gaCACCA-UGUUGUUGGGC---------------GCCCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 191274 | 0.71 | 0.850408 |
Target: 5'- -gGUGGUGCucuuCAugacGCCCaaGUGGGACGUg -3' miRNA: 3'- gaCACCAUGuu--GU----UGGG--CGCCCUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 196259 | 0.68 | 0.950847 |
Target: 5'- uCUGUGGUucCGGguACCCGCGGuGAgucuCGUu -3' miRNA: 3'- -GACACCAu-GUUguUGGGCGCC-CU----GCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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