miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 5' -54.8 NC_003521.1 + 85480 0.66 0.971139
Target:  5'- -cGUGGUGCcGguGCCCGCgcccccgccGGGACc- -3'
miRNA:   3'- gaCACCAUGuUguUGGGCG---------CCCUGca -5'
14640 5' -54.8 NC_003521.1 + 86177 0.68 0.927973
Target:  5'- ---cGGUGCGcaccaGCGACUCGCGGGccACGg -3'
miRNA:   3'- gacaCCAUGU-----UGUUGGGCGCCC--UGCa -5'
14640 5' -54.8 NC_003521.1 + 88675 0.68 0.932999
Target:  5'- -gGUGGgcCGGCGGCCCGgcucgGGGACa- -3'
miRNA:   3'- gaCACCauGUUGUUGGGCg----CCCUGca -5'
14640 5' -54.8 NC_003521.1 + 91939 0.66 0.982754
Target:  5'- -gGUGGacccgGCGGCGGacCCCGUGGcGGCGa -3'
miRNA:   3'- gaCACCa----UGUUGUU--GGGCGCC-CUGCa -5'
14640 5' -54.8 NC_003521.1 + 92343 0.66 0.971139
Target:  5'- -aGUaGUAUuuAACGACCCGCGGGcuuuuCGUc -3'
miRNA:   3'- gaCAcCAUG--UUGUUGGGCGCCCu----GCA- -5'
14640 5' -54.8 NC_003521.1 + 95960 0.69 0.911533
Target:  5'- aUGcGGUuCGGgGACCCGCGGGgaGCGa -3'
miRNA:   3'- gACaCCAuGUUgUUGGGCGCCC--UGCa -5'
14640 5' -54.8 NC_003521.1 + 99312 0.68 0.932999
Target:  5'- -gGUGGUGCGACuuCgCGCccaGGGAUGa -3'
miRNA:   3'- gaCACCAUGUUGuuGgGCG---CCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 101772 0.66 0.971139
Target:  5'- -gGUGGUGCAGCAGgUUGCGcaggucaguuGGGCGc -3'
miRNA:   3'- gaCACCAUGUUGUUgGGCGC----------CCUGCa -5'
14640 5' -54.8 NC_003521.1 + 104214 0.71 0.850408
Target:  5'- -cGUGcUGCuGCAGCCCaGCGaGGACGUg -3'
miRNA:   3'- gaCACcAUGuUGUUGGG-CGC-CCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 105814 0.66 0.980775
Target:  5'- ---cGGUGCccGGCAGCCagaugGUGGGGCGg -3'
miRNA:   3'- gacaCCAUG--UUGUUGGg----CGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 114436 0.66 0.976315
Target:  5'- cCUGUGGcgGCAccaGACCCGCGaGaACGUc -3'
miRNA:   3'- -GACACCa-UGUug-UUGGGCGC-CcUGCA- -5'
14640 5' -54.8 NC_003521.1 + 117530 0.69 0.91724
Target:  5'- -cGUGGgcUACGACGACCUGgCGGcACGUc -3'
miRNA:   3'- gaCACC--AUGUUGUUGGGC-GCCcUGCA- -5'
14640 5' -54.8 NC_003521.1 + 117711 0.71 0.850408
Target:  5'- ----cGUACAGCGGCCCgGCGaGGACGg -3'
miRNA:   3'- gacacCAUGUUGUUGGG-CGC-CCUGCa -5'
14640 5' -54.8 NC_003521.1 + 119460 0.7 0.892424
Target:  5'- ---aGGcGCGACAgugugaaGCCgCGCGGGGCGUg -3'
miRNA:   3'- gacaCCaUGUUGU-------UGG-GCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 120914 0.66 0.971139
Target:  5'- gCUGcuUGcGUuuGCGGCuGCCCGCGGcGGCGg -3'
miRNA:   3'- -GAC--AC-CA--UGUUGuUGGGCGCC-CUGCa -5'
14640 5' -54.8 NC_003521.1 + 124936 0.7 0.858022
Target:  5'- -gGU-GUACAGCAGUCCGUGGGugGg -3'
miRNA:   3'- gaCAcCAUGUUGUUGGGCGCCCugCa -5'
14640 5' -54.8 NC_003521.1 + 125093 0.66 0.982754
Target:  5'- aUGaGGUGCAG--GCgCUGCGGGAUGg -3'
miRNA:   3'- gACaCCAUGUUguUG-GGCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 126547 0.68 0.94672
Target:  5'- gCUGUGGUACucgugcGCGAaggCCGUGGGcaGCGg -3'
miRNA:   3'- -GACACCAUGu-----UGUUg--GGCGCCC--UGCa -5'
14640 5' -54.8 NC_003521.1 + 131719 0.7 0.893073
Target:  5'- -cGUGGUguGCAACAGCaaucgUCGCuGGACGUg -3'
miRNA:   3'- gaCACCA--UGUUGUUG-----GGCGcCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 136616 0.66 0.972234
Target:  5'- gCUG-GGcUGCAGCAGCaCguaaucggccacgggCGCGGGGCGg -3'
miRNA:   3'- -GACaCC-AUGUUGUUG-G---------------GCGCCCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.