miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 5' -54.8 NC_003521.1 + 166212 0.71 0.826465
Target:  5'- gCUGuUGGcGCGGCGGCgaggcgcgccggCCGCGGGACGc -3'
miRNA:   3'- -GAC-ACCaUGUUGUUG------------GGCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 165123 0.67 0.958446
Target:  5'- gCUGUGGUGCgGACGGgggcuggaCCGCGGugccGGCGUg -3'
miRNA:   3'- -GACACCAUG-UUGUUg-------GGCGCC----CUGCA- -5'
14640 5' -54.8 NC_003521.1 + 164482 0.66 0.978631
Target:  5'- --cUGGUGCGcaagACGGCCUGCGaguucgucaaGGGCGUg -3'
miRNA:   3'- gacACCAUGU----UGUUGGGCGC----------CCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 155430 0.66 0.980775
Target:  5'- gCUGUGcGaGCuggcCGACCCGCuGGGCGa -3'
miRNA:   3'- -GACAC-CaUGuu--GUUGGGCGcCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 149055 0.66 0.980775
Target:  5'- gUGUGGgGgGAUgcggGACCCGCGGGGu-- -3'
miRNA:   3'- gACACCaUgUUG----UUGGGCGCCCUgca -5'
14640 5' -54.8 NC_003521.1 + 148461 0.68 0.927973
Target:  5'- -gGUGcGUGCugauGACGaaaaGCCCGCGGGuCGUu -3'
miRNA:   3'- gaCAC-CAUG----UUGU----UGGGCGCCCuGCA- -5'
14640 5' -54.8 NC_003521.1 + 142732 0.68 0.933489
Target:  5'- aUGUGGUccuucgaguacgaagGCGACGACggggugaccagcguCCGCGGcGGCGUc -3'
miRNA:   3'- gACACCA---------------UGUUGUUG--------------GGCGCC-CUGCA- -5'
14640 5' -54.8 NC_003521.1 + 139495 0.66 0.978631
Target:  5'- ----cGUACAccGCAACCCGCaGGaGACGg -3'
miRNA:   3'- gacacCAUGU--UGUUGGGCG-CC-CUGCa -5'
14640 5' -54.8 NC_003521.1 + 138317 0.69 0.92272
Target:  5'- -cGUGGccgACAugGACCUGCGGcugcgcGACGg -3'
miRNA:   3'- gaCACCa--UGUugUUGGGCGCC------CUGCa -5'
14640 5' -54.8 NC_003521.1 + 136616 0.66 0.972234
Target:  5'- gCUG-GGcUGCAGCAGCaCguaaucggccacgggCGCGGGGCGg -3'
miRNA:   3'- -GACaCC-AUGUUGUUG-G---------------GCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 131719 0.7 0.893073
Target:  5'- -cGUGGUguGCAACAGCaaucgUCGCuGGACGUg -3'
miRNA:   3'- gaCACCA--UGUUGUUG-----GGCGcCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 126547 0.68 0.94672
Target:  5'- gCUGUGGUACucgugcGCGAaggCCGUGGGcaGCGg -3'
miRNA:   3'- -GACACCAUGu-----UGUUg--GGCGCCC--UGCa -5'
14640 5' -54.8 NC_003521.1 + 125093 0.66 0.982754
Target:  5'- aUGaGGUGCAG--GCgCUGCGGGAUGg -3'
miRNA:   3'- gACaCCAUGUUguUG-GGCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 124936 0.7 0.858022
Target:  5'- -gGU-GUACAGCAGUCCGUGGGugGg -3'
miRNA:   3'- gaCAcCAUGUUGUUGGGCGCCCugCa -5'
14640 5' -54.8 NC_003521.1 + 120914 0.66 0.971139
Target:  5'- gCUGcuUGcGUuuGCGGCuGCCCGCGGcGGCGg -3'
miRNA:   3'- -GAC--AC-CA--UGUUGuUGGGCGCC-CUGCa -5'
14640 5' -54.8 NC_003521.1 + 119460 0.7 0.892424
Target:  5'- ---aGGcGCGACAgugugaaGCCgCGCGGGGCGUg -3'
miRNA:   3'- gacaCCaUGUUGU-------UGG-GCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 117711 0.71 0.850408
Target:  5'- ----cGUACAGCGGCCCgGCGaGGACGg -3'
miRNA:   3'- gacacCAUGUUGUUGGG-CGC-CCUGCa -5'
14640 5' -54.8 NC_003521.1 + 117530 0.69 0.91724
Target:  5'- -cGUGGgcUACGACGACCUGgCGGcACGUc -3'
miRNA:   3'- gaCACC--AUGUUGUUGGGC-GCCcUGCA- -5'
14640 5' -54.8 NC_003521.1 + 114436 0.66 0.976315
Target:  5'- cCUGUGGcgGCAccaGACCCGCGaGaACGUc -3'
miRNA:   3'- -GACACCa-UGUug-UUGGGCGC-CcUGCA- -5'
14640 5' -54.8 NC_003521.1 + 105814 0.66 0.980775
Target:  5'- ---cGGUGCccGGCAGCCagaugGUGGGGCGg -3'
miRNA:   3'- gacaCCAUG--UUGUUGGg----CGCCCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.