miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 5' -54.8 NC_003521.1 + 239457 0.66 0.978631
Target:  5'- ---cGGggACAGCGgugGCCCGCGGcGCGUu -3'
miRNA:   3'- gacaCCa-UGUUGU---UGGGCGCCcUGCA- -5'
14640 5' -54.8 NC_003521.1 + 238683 0.67 0.965198
Target:  5'- gCUGgagcaGGU-CGGCGG-CCGUGGGACGUu -3'
miRNA:   3'- -GACa----CCAuGUUGUUgGGCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 235565 1.08 0.007283
Target:  5'- cCUGUGGUACAACAACCCGCGGGACGUg -3'
miRNA:   3'- -GACACCAUGUUGUUGGGCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 234602 0.66 0.982754
Target:  5'- gCUGUGGUGCGAC----UGCGGGAa-- -3'
miRNA:   3'- -GACACCAUGUUGuuggGCGCCCUgca -5'
14640 5' -54.8 NC_003521.1 + 226340 0.67 0.954754
Target:  5'- --aUGGUGCGcGCGcCCCGCGGGuaGCGc -3'
miRNA:   3'- gacACCAUGU-UGUuGGGCGCCC--UGCa -5'
14640 5' -54.8 NC_003521.1 + 224773 0.68 0.942371
Target:  5'- -aGUuGUGCAGCAgcGCCCGCaccacgucgugcGGGACGc -3'
miRNA:   3'- gaCAcCAUGUUGU--UGGGCG------------CCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 222821 0.66 0.980775
Target:  5'- -gGUGGUGgaaAACGGCguCUGCGGGugGc -3'
miRNA:   3'- gaCACCAUg--UUGUUG--GGCGCCCugCa -5'
14640 5' -54.8 NC_003521.1 + 219259 0.67 0.965198
Target:  5'- ---gGGUAgAGCAggGCCCGCaGGGGCu- -3'
miRNA:   3'- gacaCCAUgUUGU--UGGGCG-CCCUGca -5'
14640 5' -54.8 NC_003521.1 + 196954 0.72 0.801011
Target:  5'- -cGUGG-GCGACGGCCCGggagccggcCGGGGCGc -3'
miRNA:   3'- gaCACCaUGUUGUUGGGC---------GCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 196259 0.68 0.950847
Target:  5'- uCUGUGGUucCGGguACCCGCGGuGAgucuCGUu -3'
miRNA:   3'- -GACACCAu-GUUguUGGGCGCC-CU----GCA- -5'
14640 5' -54.8 NC_003521.1 + 191274 0.71 0.850408
Target:  5'- -gGUGGUGCucuuCAugacGCCCaaGUGGGACGUg -3'
miRNA:   3'- gaCACCAUGuu--GU----UGGG--CGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 187498 0.72 0.795757
Target:  5'- -gGUGGUcACGACGAUCCGacgagacggcuccucCGGGACGa -3'
miRNA:   3'- gaCACCA-UGUUGUUGGGC---------------GCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 185188 0.69 0.9211
Target:  5'- cCUGUGGaGCGugAcgcccucgguguggGCCgCGCGGGACu- -3'
miRNA:   3'- -GACACCaUGUugU--------------UGG-GCGCCCUGca -5'
14640 5' -54.8 NC_003521.1 + 184193 0.68 0.927973
Target:  5'- -cGUGGUGCgcuucuucGugGACCUcUGGGACGUg -3'
miRNA:   3'- gaCACCAUG--------UugUUGGGcGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 182276 0.69 0.92272
Target:  5'- uUGaGGUACuGCGuGCCCGCGgGGAUGg -3'
miRNA:   3'- gACaCCAUGuUGU-UGGGCGC-CCUGCa -5'
14640 5' -54.8 NC_003521.1 + 178779 0.68 0.950847
Target:  5'- --aUGGuUGCGGCgu-CCGCGGGACGg -3'
miRNA:   3'- gacACC-AUGUUGuugGGCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 174057 0.77 0.520612
Target:  5'- uCUG-GGccgGCGGCAucACCCGCGGGAUGUc -3'
miRNA:   3'- -GACaCCa--UGUUGU--UGGGCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 173242 0.69 0.899448
Target:  5'- -cGUGuugGCGACucugGCCCGCGGGGCc- -3'
miRNA:   3'- gaCACca-UGUUGu---UGGGCGCCCUGca -5'
14640 5' -54.8 NC_003521.1 + 168118 0.71 0.834623
Target:  5'- -cGUGGaucgccgaggACGACAGCgCCGUGGGugGa -3'
miRNA:   3'- gaCACCa---------UGUUGUUG-GGCGCCCugCa -5'
14640 5' -54.8 NC_003521.1 + 167942 0.68 0.94672
Target:  5'- -cGUGuaGCGugAGCCUGCGGuGACGa -3'
miRNA:   3'- gaCACcaUGUugUUGGGCGCC-CUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.