Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14640 | 5' | -54.8 | NC_003521.1 | + | 185188 | 0.69 | 0.9211 |
Target: 5'- cCUGUGGaGCGugAcgcccucgguguggGCCgCGCGGGACu- -3' miRNA: 3'- -GACACCaUGUugU--------------UGG-GCGCCCUGca -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 64594 | 0.69 | 0.92272 |
Target: 5'- --aUGGUGaAGCGGCUggCGCGGGACGa -3' miRNA: 3'- gacACCAUgUUGUUGG--GCGCCCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 182276 | 0.69 | 0.92272 |
Target: 5'- uUGaGGUACuGCGuGCCCGCGgGGAUGg -3' miRNA: 3'- gACaCCAUGuUGU-UGGGCGC-CCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 138317 | 0.69 | 0.92272 |
Target: 5'- -cGUGGccgACAugGACCUGCGGcugcgcGACGg -3' miRNA: 3'- gaCACCa--UGUugUUGGGCGCC------CUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 58742 | 0.68 | 0.927973 |
Target: 5'- ---cGGUGCAGCAGCCacuGCGGGcUGa -3' miRNA: 3'- gacaCCAUGUUGUUGGg--CGCCCuGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 148461 | 0.68 | 0.927973 |
Target: 5'- -gGUGcGUGCugauGACGaaaaGCCCGCGGGuCGUu -3' miRNA: 3'- gaCAC-CAUG----UUGU----UGGGCGCCCuGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 86177 | 0.68 | 0.927973 |
Target: 5'- ---cGGUGCGcaccaGCGACUCGCGGGccACGg -3' miRNA: 3'- gacaCCAUGU-----UGUUGGGCGCCC--UGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 184193 | 0.68 | 0.927973 |
Target: 5'- -cGUGGUGCgcuucuucGugGACCUcUGGGACGUg -3' miRNA: 3'- gaCACCAUG--------UugUUGGGcGCCCUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 88675 | 0.68 | 0.932999 |
Target: 5'- -gGUGGgcCGGCGGCCCGgcucgGGGACa- -3' miRNA: 3'- gaCACCauGUUGUUGGGCg----CCCUGca -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 99312 | 0.68 | 0.932999 |
Target: 5'- -gGUGGUGCGACuuCgCGCccaGGGAUGa -3' miRNA: 3'- gaCACCAUGUUGuuGgGCG---CCCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 7448 | 0.68 | 0.932999 |
Target: 5'- ---cGGcgcACAGC-ACCaCGCGGGACGUg -3' miRNA: 3'- gacaCCa--UGUUGuUGG-GCGCCCUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 142732 | 0.68 | 0.933489 |
Target: 5'- aUGUGGUccuucgaguacgaagGCGACGACggggugaccagcguCCGCGGcGGCGUc -3' miRNA: 3'- gACACCA---------------UGUUGUUG--------------GGCGCC-CUGCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 224773 | 0.68 | 0.942371 |
Target: 5'- -aGUuGUGCAGCAgcGCCCGCaccacgucgugcGGGACGc -3' miRNA: 3'- gaCAcCAUGUUGU--UGGGCG------------CCCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 38163 | 0.68 | 0.94672 |
Target: 5'- gUGUaGGUGCAggGCGuCCCaGCGGGGCc- -3' miRNA: 3'- gACA-CCAUGU--UGUuGGG-CGCCCUGca -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 126547 | 0.68 | 0.94672 |
Target: 5'- gCUGUGGUACucgugcGCGAaggCCGUGGGcaGCGg -3' miRNA: 3'- -GACACCAUGu-----UGUUg--GGCGCCC--UGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 14478 | 0.68 | 0.94672 |
Target: 5'- ------cGCGGCGcuACCCGCGGGGCGc -3' miRNA: 3'- gacaccaUGUUGU--UGGGCGCCCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 167942 | 0.68 | 0.94672 |
Target: 5'- -cGUGuaGCGugAGCCUGCGGuGACGa -3' miRNA: 3'- gaCACcaUGUugUUGGGCGCC-CUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 196259 | 0.68 | 0.950847 |
Target: 5'- uCUGUGGUucCGGguACCCGCGGuGAgucuCGUu -3' miRNA: 3'- -GACACCAu-GUUguUGGGCGCC-CU----GCA- -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 178779 | 0.68 | 0.950847 |
Target: 5'- --aUGGuUGCGGCgu-CCGCGGGACGg -3' miRNA: 3'- gacACC-AUGUUGuugGGCGCCCUGCa -5' |
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14640 | 5' | -54.8 | NC_003521.1 | + | 226340 | 0.67 | 0.954754 |
Target: 5'- --aUGGUGCGcGCGcCCCGCGGGuaGCGc -3' miRNA: 3'- gacACCAUGU-UGUuGGGCGCCC--UGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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