miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14640 5' -54.8 NC_003521.1 + 92343 0.66 0.971139
Target:  5'- -aGUaGUAUuuAACGACCCGCGGGcuuuuCGUc -3'
miRNA:   3'- gaCAcCAUG--UUGUUGGGCGCCCu----GCA- -5'
14640 5' -54.8 NC_003521.1 + 85480 0.66 0.971139
Target:  5'- -cGUGGUGCcGguGCCCGCgcccccgccGGGACc- -3'
miRNA:   3'- gaCACCAUGuUguUGGGCG---------CCCUGca -5'
14640 5' -54.8 NC_003521.1 + 76322 0.67 0.968267
Target:  5'- -gGUGGcgGCGACAG-CUGCGGaGGCGa -3'
miRNA:   3'- gaCACCa-UGUUGUUgGGCGCC-CUGCa -5'
14640 5' -54.8 NC_003521.1 + 38456 0.67 0.965198
Target:  5'- gCUGgagcaGGU-CGGCGG-CCGUGGGACGUu -3'
miRNA:   3'- -GACa----CCAuGUUGUUgGGCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 219259 0.67 0.965198
Target:  5'- ---gGGUAgAGCAggGCCCGCaGGGGCu- -3'
miRNA:   3'- gacaCCAUgUUGU--UGGGCG-CCCUGca -5'
14640 5' -54.8 NC_003521.1 + 238683 0.67 0.965198
Target:  5'- gCUGgagcaGGU-CGGCGG-CCGUGGGACGUu -3'
miRNA:   3'- -GACa----CCAuGUUGUUgGGCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 36395 0.67 0.961926
Target:  5'- -cGUGcUGCuGGCGGCagCGCGGGGCGUg -3'
miRNA:   3'- gaCACcAUG-UUGUUGg-GCGCCCUGCA- -5'
14640 5' -54.8 NC_003521.1 + 30263 0.67 0.961926
Target:  5'- -cGUGGcGCAGCuGACCCugGCGGGcGCGc -3'
miRNA:   3'- gaCACCaUGUUG-UUGGG--CGCCC-UGCa -5'
14640 5' -54.8 NC_003521.1 + 165123 0.67 0.958446
Target:  5'- gCUGUGGUGCgGACGGgggcuggaCCGCGGugccGGCGUg -3'
miRNA:   3'- -GACACCAUG-UUGUUg-------GGCGCC----CUGCA- -5'
14640 5' -54.8 NC_003521.1 + 226340 0.67 0.954754
Target:  5'- --aUGGUGCGcGCGcCCCGCGGGuaGCGc -3'
miRNA:   3'- gacACCAUGU-UGUuGGGCGCCC--UGCa -5'
14640 5' -54.8 NC_003521.1 + 196259 0.68 0.950847
Target:  5'- uCUGUGGUucCGGguACCCGCGGuGAgucuCGUu -3'
miRNA:   3'- -GACACCAu-GUUguUGGGCGCC-CU----GCA- -5'
14640 5' -54.8 NC_003521.1 + 178779 0.68 0.950847
Target:  5'- --aUGGuUGCGGCgu-CCGCGGGACGg -3'
miRNA:   3'- gacACC-AUGUUGuugGGCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 38163 0.68 0.94672
Target:  5'- gUGUaGGUGCAggGCGuCCCaGCGGGGCc- -3'
miRNA:   3'- gACA-CCAUGU--UGUuGGG-CGCCCUGca -5'
14640 5' -54.8 NC_003521.1 + 126547 0.68 0.94672
Target:  5'- gCUGUGGUACucgugcGCGAaggCCGUGGGcaGCGg -3'
miRNA:   3'- -GACACCAUGu-----UGUUg--GGCGCCC--UGCa -5'
14640 5' -54.8 NC_003521.1 + 167942 0.68 0.94672
Target:  5'- -cGUGuaGCGugAGCCUGCGGuGACGa -3'
miRNA:   3'- gaCACcaUGUugUUGGGCGCC-CUGCa -5'
14640 5' -54.8 NC_003521.1 + 14478 0.68 0.94672
Target:  5'- ------cGCGGCGcuACCCGCGGGGCGc -3'
miRNA:   3'- gacaccaUGUUGU--UGGGCGCCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 224773 0.68 0.942371
Target:  5'- -aGUuGUGCAGCAgcGCCCGCaccacgucgugcGGGACGc -3'
miRNA:   3'- gaCAcCAUGUUGU--UGGGCG------------CCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 142732 0.68 0.933489
Target:  5'- aUGUGGUccuucgaguacgaagGCGACGACggggugaccagcguCCGCGGcGGCGUc -3'
miRNA:   3'- gACACCA---------------UGUUGUUG--------------GGCGCC-CUGCA- -5'
14640 5' -54.8 NC_003521.1 + 99312 0.68 0.932999
Target:  5'- -gGUGGUGCGACuuCgCGCccaGGGAUGa -3'
miRNA:   3'- gaCACCAUGUUGuuGgGCG---CCCUGCa -5'
14640 5' -54.8 NC_003521.1 + 7448 0.68 0.932999
Target:  5'- ---cGGcgcACAGC-ACCaCGCGGGACGUg -3'
miRNA:   3'- gacaCCa--UGUUGuUGG-GCGCCCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.