miRNA display CGI


Results 61 - 80 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 120543 0.66 0.865391
Target:  5'- cCUCGGCgGCcGGCGGUc--CCGGgggagcgCCc -3'
miRNA:   3'- -GAGCCGgCGuUCGCCGcuuGGCCa------GG- -5'
14641 3' -59.8 NC_003521.1 + 30854 0.66 0.858263
Target:  5'- uCUgGGCCGUccGCGGCaacuucuccGAACCcuuuccccgGGUCUa -3'
miRNA:   3'- -GAgCCGGCGuuCGCCG---------CUUGG---------CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 186762 0.66 0.850956
Target:  5'- gCUCGGCgGCAucggcggaGGCGGCGG--UGGUg- -3'
miRNA:   3'- -GAGCCGgCGU--------UCGCCGCUugGCCAgg -5'
14641 3' -59.8 NC_003521.1 + 97296 0.66 0.850956
Target:  5'- -cCGGCgGCGcGCGuGCGGAUCaGGcCCg -3'
miRNA:   3'- gaGCCGgCGUuCGC-CGCUUGG-CCaGG- -5'
14641 3' -59.8 NC_003521.1 + 5302 0.66 0.858263
Target:  5'- -cCGGCauguuuCGCGggGGCGGCGugccccGCCGG-CCg -3'
miRNA:   3'- gaGCCG------GCGU--UCGCCGCu-----UGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 122624 0.66 0.858263
Target:  5'- -gCGGCCGCGcgcucGGCGGCcccGAcuuuGCCGG-Cg -3'
miRNA:   3'- gaGCCGGCGU-----UCGCCG---CU----UGGCCaGg -5'
14641 3' -59.8 NC_003521.1 + 147090 0.66 0.850956
Target:  5'- aUCGGCCGacGGCucacGCGAcuuuucuccgacGCCGGUCa -3'
miRNA:   3'- gAGCCGGCguUCGc---CGCU------------UGGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 196453 0.66 0.850956
Target:  5'- cCUCGGCCuCGGGCG-UGGGCCGcagCCc -3'
miRNA:   3'- -GAGCCGGcGUUCGCcGCUUGGCca-GG- -5'
14641 3' -59.8 NC_003521.1 + 126567 0.66 0.84873
Target:  5'- --aGGCCGUggGCaGCGGgaagccgccgucguGCCGGUg- -3'
miRNA:   3'- gagCCGGCGuuCGcCGCU--------------UGGCCAgg -5'
14641 3' -59.8 NC_003521.1 + 72845 0.66 0.850956
Target:  5'- -aCGGCCugGGGCGGCGAcgguaggcacGgCGGUCg -3'
miRNA:   3'- gaGCCGGcgUUCGCCGCU----------UgGCCAGg -5'
14641 3' -59.8 NC_003521.1 + 52186 0.66 0.850216
Target:  5'- -gUGuGCCGCcgGGGCGGCGAGCucaucagacaguaCGGgggCCg -3'
miRNA:   3'- gaGC-CGGCG--UUCGCCGCUUG-------------GCCa--GG- -5'
14641 3' -59.8 NC_003521.1 + 174465 0.66 0.850956
Target:  5'- gCUC-GCCGCcGGCcacGCGAGCgGGaUCCa -3'
miRNA:   3'- -GAGcCGGCGuUCGc--CGCUUGgCC-AGG- -5'
14641 3' -59.8 NC_003521.1 + 86440 0.66 0.850956
Target:  5'- aUUGGCgGC-AGCGGCGAccgaggacgcgACagaGGUCg -3'
miRNA:   3'- gAGCCGgCGuUCGCCGCU-----------UGg--CCAGg -5'
14641 3' -59.8 NC_003521.1 + 4343 0.66 0.872334
Target:  5'- cCUCGGUCu----CGGaCGGACCGGUUCg -3'
miRNA:   3'- -GAGCCGGcguucGCC-GCUUGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 1320 0.66 0.872334
Target:  5'- -cCGGCgaCGUGGcGCGGCuguAUCGGUCCa -3'
miRNA:   3'- gaGCCG--GCGUU-CGCCGcu-UGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 197880 0.66 0.872334
Target:  5'- gCUgGGCUGCAGGCGGC--AgCGGa-- -3'
miRNA:   3'- -GAgCCGGCGUUCGCCGcuUgGCCagg -5'
14641 3' -59.8 NC_003521.1 + 124034 0.66 0.877082
Target:  5'- -gCGGCCGUAGacggccagcgugccGCGGCGG--CGGcCCa -3'
miRNA:   3'- gaGCCGGCGUU--------------CGCCGCUugGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 140563 0.66 0.885649
Target:  5'- -gCGGCgGC-GGCGGCGAcaGCUcGUCg -3'
miRNA:   3'- gaGCCGgCGuUCGCCGCU--UGGcCAGg -5'
14641 3' -59.8 NC_003521.1 + 38233 0.66 0.879088
Target:  5'- -gCGGCCucgGCGGGCGGgGcggaGACgCGGcCCa -3'
miRNA:   3'- gaGCCGG---CGUUCGCCgC----UUG-GCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 23216 0.66 0.875058
Target:  5'- -gCGGCCGaGAcgccccugcugguccGgGGCGGACCcggGGUCCu -3'
miRNA:   3'- gaGCCGGCgUU---------------CgCCGCUUGG---CCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.