miRNA display CGI


Results 41 - 60 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 209562 0.66 0.850956
Target:  5'- -gUGGCgGCGacGGUGGCGGG--GGUCCg -3'
miRNA:   3'- gaGCCGgCGU--UCGCCGCUUggCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 216839 0.66 0.872334
Target:  5'- --aGGUCGCAGcccGCGGCGGacgACUGuUCCa -3'
miRNA:   3'- gagCCGGCGUU---CGCCGCU---UGGCcAGG- -5'
14641 3' -59.8 NC_003521.1 + 168539 0.66 0.879088
Target:  5'- -gCGGCCaGCGcGGCGGCGGcGCUGG-Cg -3'
miRNA:   3'- gaGCCGG-CGU-UCGCCGCU-UGGCCaGg -5'
14641 3' -59.8 NC_003521.1 + 234431 0.66 0.8539
Target:  5'- gUCGccGCCGCGGuagcuGCGGCGccccuccgcgaccccGACCGGcCCc -3'
miRNA:   3'- gAGC--CGGCGUU-----CGCCGC---------------UUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 140563 0.66 0.885649
Target:  5'- -gCGGCgGC-GGCGGCGAcaGCUcGUCg -3'
miRNA:   3'- gaGCCGgCGuUCGCCGCU--UGGcCAGg -5'
14641 3' -59.8 NC_003521.1 + 86347 0.66 0.858263
Target:  5'- --aGGCCGU--GCaGCGAGCCGauguaGUCCu -3'
miRNA:   3'- gagCCGGCGuuCGcCGCUUGGC-----CAGG- -5'
14641 3' -59.8 NC_003521.1 + 132608 0.66 0.8539
Target:  5'- gUCGGCgucCGCAacggcuuccagacucGGCGGCGGcgccACCGGcgguucugcuUCCu -3'
miRNA:   3'- gAGCCG---GCGU---------------UCGCCGCU----UGGCC----------AGG- -5'
14641 3' -59.8 NC_003521.1 + 102944 0.66 0.872334
Target:  5'- aUCGGa--CAGGCGGuUGAuCUGGUCCa -3'
miRNA:   3'- gAGCCggcGUUCGCC-GCUuGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 99183 0.66 0.875058
Target:  5'- -cCGGCCugggggcugaaGguGGCGGCGGAggauacggcggggucCgCGGUCCu -3'
miRNA:   3'- gaGCCGG-----------CguUCGCCGCUU---------------G-GCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 116464 0.66 0.879088
Target:  5'- -gCGGCCGUGgugggacacguGGCGGCGAugaagaGcGUCCg -3'
miRNA:   3'- gaGCCGGCGU-----------UCGCCGCUugg---C-CAGG- -5'
14641 3' -59.8 NC_003521.1 + 129040 0.66 0.872334
Target:  5'- gUCGGCCGUguucuuGAGCGcGCGcagcACCGuGUgCa -3'
miRNA:   3'- gAGCCGGCG------UUCGC-CGCu---UGGC-CAgG- -5'
14641 3' -59.8 NC_003521.1 + 137168 0.66 0.865391
Target:  5'- -gCGGCCGC-AGCGGCc-GCCG--CCg -3'
miRNA:   3'- gaGCCGGCGuUCGCCGcuUGGCcaGG- -5'
14641 3' -59.8 NC_003521.1 + 6049 0.66 0.871648
Target:  5'- uCUCGGgCGguAGCGGgucgaCGAagggaaugcgacgGCCGGUgCg -3'
miRNA:   3'- -GAGCCgGCguUCGCC-----GCU-------------UGGCCAgG- -5'
14641 3' -59.8 NC_003521.1 + 127083 0.66 0.871648
Target:  5'- gUCaGCCGCcagcaggaacgucGGGCGGUaGAAgaGGUCCa -3'
miRNA:   3'- gAGcCGGCG-------------UUCGCCG-CUUggCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 70127 0.66 0.8539
Target:  5'- --gGGCCGCuAucagggccucgagcuGCGGCGAGCgCGGcugCCu -3'
miRNA:   3'- gagCCGGCGuU---------------CGCCGCUUG-GCCa--GG- -5'
14641 3' -59.8 NC_003521.1 + 27109 0.66 0.864686
Target:  5'- -aCGGCgCGCAGGCcggugcgGGCGAACUccaugaGGUUg -3'
miRNA:   3'- gaGCCG-GCGUUCG-------CCGCUUGG------CCAGg -5'
14641 3' -59.8 NC_003521.1 + 218074 0.66 0.865391
Target:  5'- uCUCGaaGCacaGCgAGGCGGCGGcGCCGGUg- -3'
miRNA:   3'- -GAGC--CGg--CG-UUCGCCGCU-UGGCCAgg -5'
14641 3' -59.8 NC_003521.1 + 74791 0.66 0.865391
Target:  5'- -aCGGCgGCAgcgguAGCGGCGAGacgcggacggaCGGcgCCg -3'
miRNA:   3'- gaGCCGgCGU-----UCGCCGCUUg----------GCCa-GG- -5'
14641 3' -59.8 NC_003521.1 + 217379 0.66 0.864686
Target:  5'- -aCGGCCaggcacaccguggGCAccgccaggcugAGCGGCGGcaugaaGCCGGUgCa -3'
miRNA:   3'- gaGCCGG-------------CGU-----------UCGCCGCU------UGGCCAgG- -5'
14641 3' -59.8 NC_003521.1 + 133750 0.66 0.850956
Target:  5'- -cUGGCCgGCAGGCccGGCGAuuCCGGg-- -3'
miRNA:   3'- gaGCCGG-CGUUCG--CCGCUu-GGCCagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.