miRNA display CGI


Results 41 - 60 of 311 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14641 3' -59.8 NC_003521.1 + 86714 0.72 0.525167
Target:  5'- -cCGGCCGCGAGa--UGGGCCGGUUCu -3'
miRNA:   3'- gaGCCGGCGUUCgccGCUUGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 116887 0.72 0.525167
Target:  5'- -gCGGCUGC-GGCGGCGcGCCGG-Cg -3'
miRNA:   3'- gaGCCGGCGuUCGCCGCuUGGCCaGg -5'
14641 3' -59.8 NC_003521.1 + 117655 0.72 0.525167
Target:  5'- -cUGcGCCGCGAGaCGGUGcGCCGGcCCu -3'
miRNA:   3'- gaGC-CGGCGUUC-GCCGCuUGGCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 153124 0.72 0.534415
Target:  5'- -aCGGCaGCAGGCGGCu--UUGGUCCa -3'
miRNA:   3'- gaGCCGgCGUUCGCCGcuuGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 195540 0.72 0.534415
Target:  5'- -cUGGCC-C-AGCGGCGc-CCGGUCCa -3'
miRNA:   3'- gaGCCGGcGuUCGCCGCuuGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 26108 0.72 0.54372
Target:  5'- gUCGGCCaGguAGaguuCGGCGGGCCGGcugcuUCCg -3'
miRNA:   3'- gAGCCGG-CguUC----GCCGCUUGGCC-----AGG- -5'
14641 3' -59.8 NC_003521.1 + 27703 0.72 0.552139
Target:  5'- -gCGGCCGCAccacgccacacccAGCGcGuCGAGCCGcGUCUc -3'
miRNA:   3'- gaGCCGGCGU-------------UCGC-C-GCUUGGC-CAGG- -5'
14641 3' -59.8 NC_003521.1 + 123572 0.72 0.553077
Target:  5'- -gCGGUgGCGggauGGCGGCGGcGCCGGgagCCg -3'
miRNA:   3'- gaGCCGgCGU----UCGCCGCU-UGGCCa--GG- -5'
14641 3' -59.8 NC_003521.1 + 117234 0.72 0.553077
Target:  5'- -aCGGCCGC-GGCGGCuc-CCGGcgCCg -3'
miRNA:   3'- gaGCCGGCGuUCGCCGcuuGGCCa-GG- -5'
14641 3' -59.8 NC_003521.1 + 104693 0.71 0.580465
Target:  5'- --gGGCCGUggGCGGCGucgacgugcccucGACCgcGGUCUc -3'
miRNA:   3'- gagCCGGCGuuCGCCGC-------------UUGG--CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 207908 0.71 0.581415
Target:  5'- -cCGGCCGCcaccuacgccggGGGCGGCGGGCaCGG-Cg -3'
miRNA:   3'- gaGCCGGCG------------UUCGCCGCUUG-GCCaGg -5'
14641 3' -59.8 NC_003521.1 + 15223 0.71 0.581415
Target:  5'- --gGGCUGCAGGCGGCcGAGCgcgaGG-CCg -3'
miRNA:   3'- gagCCGGCGUUCGCCG-CUUGg---CCaGG- -5'
14641 3' -59.8 NC_003521.1 + 148629 0.71 0.581415
Target:  5'- -gCGGCCG--GGCGGCGAAaaaCGGcCCc -3'
miRNA:   3'- gaGCCGGCguUCGCCGCUUg--GCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 109975 0.71 0.590931
Target:  5'- -cUGcGCCuGCAguagGGCGGCcuGCCGGUCCa -3'
miRNA:   3'- gaGC-CGG-CGU----UCGCCGcuUGGCCAGG- -5'
14641 3' -59.8 NC_003521.1 + 204891 0.71 0.610038
Target:  5'- aUUGGCCGC--GCGGCGGGaCGGUggCCg -3'
miRNA:   3'- gAGCCGGCGuuCGCCGCUUgGCCA--GG- -5'
14641 3' -59.8 NC_003521.1 + 42612 0.71 0.610038
Target:  5'- -aCGGCCGCcGGCGGC--GCCGucgCCg -3'
miRNA:   3'- gaGCCGGCGuUCGCCGcuUGGCca-GG- -5'
14641 3' -59.8 NC_003521.1 + 121781 0.71 0.618658
Target:  5'- gUCGGCCacggGCAGGUGGCGGuacuugcGCuCGG-CCg -3'
miRNA:   3'- gAGCCGG----CGUUCGCCGCU-------UG-GCCaGG- -5'
14641 3' -59.8 NC_003521.1 + 92022 0.71 0.619617
Target:  5'- -gCGGCgGCGgcGGCGGUGggUCcgggGGUCCc -3'
miRNA:   3'- gaGCCGgCGU--UCGCCGCuuGG----CCAGG- -5'
14641 3' -59.8 NC_003521.1 + 227637 0.71 0.629203
Target:  5'- -gCGGCC-CGAGCGGCacGCCuGGUCa -3'
miRNA:   3'- gaGCCGGcGUUCGCCGcuUGG-CCAGg -5'
14641 3' -59.8 NC_003521.1 + 152040 0.71 0.629203
Target:  5'- --aGGCCGC-AGCGGUGcuucACCcgcaGGUCCg -3'
miRNA:   3'- gagCCGGCGuUCGCCGCu---UGG----CCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.